Gemeinhardt, T. M. | Search bioRxiv

bioRxiv2023

How a disordered linker in the Polycomb protein Polyhomeotic tunes phase separation and oligomerization

Biomolecular condensates are increasingly appreciated for their function in organizing and regulating biochemical processes in cells, including chromatin function. Condensate formation and properties are encoded in protein sequence but the mechanisms linking sequence to macroscale properties are incompletely understood. Cross species comparisons can reveal mechanisms either because they identify conserved functions or because they point to important differences. Here we use in vitro reconstitution and molecular dynamics simulations to compare Drosophila and human sequences that regulate condensate formation driven by the sterile alpha motif (SAM) oligomerization domain in the Polyhomeotic (Ph) subunit of the chromatin regulatory complex PRC1. We discover evolutionarily diverged contacts between the conserved SAM and the disordered linker that connects it to the rest of Ph. Linker-SAM interactions increase oligomerization and regulate formation and properties of reconstituted condensates. Oligomerization affects condensate dynamics but, in most cases, has little effect on their formation. Linker-SAM interactions also affect condensate formation in Drosophila and human cells, and growth in Drosophila imaginal discs. Our data show how evolutionary sequence changes in linkers connecting conserved structured domains can alter condensate properties. In briefLinking sequence to macroscale properties of biomolecular condensates remains elusive. The authors dissect the function of a disordered linker connecting conserved structured domains in a Polycomb protein with biochemistry and molecular dynamics simulations revealing how sequence changes between Drosophila and humans alter condensates and growth in cells and developing flies. O_FIG O_LINKSMALLFIG WIDTH=168 HEIGHT=200 SRC="FIGDIR/small/564264v2_ufig1.gif" ALT="Figure 1"> View larger version (40K): org.highwire.dtl.DTLVardef@a8bd84org.highwire.dtl.DTLVardef@322eaeorg.highwire.dtl.DTLVardef@96a3a8org.highwire.dtl.DTLVardef@1d2a978_HPS_FORMAT_FIGEXP M_FIG Graphical abstract C_FIG HighlightsO_LIPRC1 condensates form partly through the conserved SAM domain of Polyhomeotic (Ph) C_LIO_LILinker connecting Ph domains regulates SAM oligomerization and phase separation C_LIO_LILinker-SAM contacts with human but not fly linker in molecular dynamics simulations C_LIO_LILinker-SAM contacts tune condensates in vitro and in cells, and affect cell growth C_LI

biochemistry↗

bioRxiv2018

Functionally asymmetric motor neurons coordinate locomotion of Caenorhabditis elegans

Invertebrate nervous systems are valuable models for fundamental principles of the control of behavior. Ventral nerve cord (VNC) motor neurons in Caenorhabditis elegans represent one of the best studied locomotor circuits, with known connectivity and functional information about most of the involved neuron classes. However, for one of those, the AS motor neurons (AS MNs), no physiological data is available. Combining specific expression and selective illumination, we precisely targeted AS MNs by optogenetics and addressed their role in the locomotion circuit. After photostimulation, AS MNs induce currents in post-synaptic body wall muscles (BWMs), exhibiting an initial asymmetry of excitatory output. This may facilitate complex regulatory motifs for adjusting direction during navigation. By behavioral and photo-inhibition experiments, we show that AS MNs contribute to propagation of the antero-posterior body wave during locomotion. By Ca2+-imaging in AS MNs and in their synaptic partners, we also reveal that AS MNs play a role in mediating forward and backward locomotion by integrating activity of premotor interneurons (PINs), as well as in coordination of the dorso-ventral body wave. AS MNs do not exhibit pacemaker properties, but potentially gate VNC central pattern generators (CPGs), as indicated by ceasing of locomotion when AS MNs are hyperpolarized. AS MNs provide positive feedback to the PIN AVA via gap junctions, a feature found also in other locomotion circuits. In sum, AS MNs have essential roles in coordinating locomotion, combining several functions, and emphasizing the compressed nature of the C. elegans nervous system in comparison to higher animals.\n\nHighlightsA class of motor neurons with unidentified function - AS cholinergic motor neurons - was characterized in C. elegans.\n\nAS neurons show asymmetry in both input and output and are specialized in coordination of dorso-ventral undulation bends.\n\nAS neurons mediate antero-posterior propagation of the undulatory body wave during locomotion.\n\nAS neurons integrate signals for forward and reverse locomotion from premotor interneurons and may gate ventral nerve cord central pattern generators (CPGs) via gap junctions.

neuroscience↗