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Biology subjects

Garcia, N. C.

Publications and source records attributed to Garcia, N. C..

2 recordsLinked to original sources

Using supervised machine learning to quantify cleaning behaviour

Cleaner fish engage in mutualistic interactions by removing ectoparasites from client species, a behaviour that has traditionally been quantified through labour-intensive manual video analysis. This method is not only time-consuming but also susceptible to human error and bias. In this study, we developed a semi-automated system to track and classify cleaning interactions between the cleaner wrasse (Labroides dimidiatus) and the powder blue tang (Acanthurus leucosternon) in a controlled three-dimensional laboratory setting. We employed DeepLabCut (DLC), a deep learning-based tool for markerless pose estimation, to track both fish species simultaneously. The resulting model reliably tracked both individuals with low error rates. Using the tracking data, we designed a classification algorithm that detected cleaning interactions with 90% accuracy. Although the algorithm misclassified approximately 15% of non-interactions as interactions, it successfully identified 25% of video content as containing interactions, thereby reducing the amount of footage requiring manual annotation by 75%. This approach significantly decreases human labour while maintaining high classification performance. Overall, our system represents a valuable step toward automating behavioural analysis in marine mutualisms and can serve as a foundation for broader applications in ethology and conservation research.

animal behavior and cognition↗

Mechanisms involved in the production of differently colored feathers in the structurally-colored Swallow Tanager (Tersina viridis; Aves: Thraupidae)

Non-iridescent, structurally-based coloration in birds originates from the feathers internal nanostructure (the keratin spongy matrix), but the presence of melanin and the characteristics of the barbs cortex can affect the resulting color. Here we investigate how this nanostructure is regulated and combined with other elements in differently-colored plumage patches. To do so, we investigated the association between light reflectance and the morphology of feathers from the back and belly plumage patches of male Swallow Tanagers (Tersina viridis), which look greenish-blue and white, respectively. Both plumage patches have a reflectance peak around 550 nm, but the reflectance spectrum is much less saturated in the belly. The barbs of both types of feathers have similar spongy matrices at their tips which produce similar reflectance spectra. However, the color of the belly feather barbs changes from light green at the tip to white closer to the rachis. These barbs lack pigments and their morphology changes considerably: the spongy matrix is reduced, being almost hollow, and has a different shape towards the rachis. Instead, we observed deposition of melanin underneath the spongy matrix in the back feathers which had a much saturated coloration that was consistent along the barbs length. Overall, our results suggest that the color differences between the white and greenish-blue plumage are mostly due to the differential deposition of melanin and a reduction of the spongy matrix in some parts of the belly feather barbs, and not a result of changes in the periodicity of the spongy matrix.

evolutionary biology↗