Biology subjects

Frede, A.

Publications and source records attributed to Frede, A..

4 recordsLinked to original sources

bioRxiv2025

The murine intestinal pathobiont Helicobacter hepaticus attenuates DSS colitis in a CD4+ T cell-dependent manner

The host immune system is fundamentally shaped by its resident microbiota; however, much remains unknown about how individual microbial species contribute to health and disease. Helicobacter hepaticus (Hh) is a member of the murine intestinal microbiota associated with colitis in immunodeficient mice, despite driving dominant immune regulatory responses in normal hosts which allow colonization without pathology. However, whether this colonization influences intestinal immune homeostasis more widely remains unexplored. Here, we report that Hh colonization confers a disease protective effect on DSS colitis, attenuating intestinal inflammation and other disease parameters. Disease attenuation required persistent colonization and was dependent on host CD4+ T cells. We further show that Hh colonization promotes a conserved anti-inflammatory transcriptional programme across several effector and regulatory intestinal CD4+ T cell subsets. Thus, although persistent stimulation of host immune responses allows the host to tolerate pathobionts like Hh, this is compensated by the promotion of tissue-protective immunological conditioning.

immunology↗

bioRxiv2024

Intestinal helminth skews DC2 development towards regulatory phenotype to counter the anti-helminth immune response.

The intestinal immune system maintains a balance between active immunity needed for protection and tolerance towards harmless antigens. Dendritic cells (DCs) found in the intestinal mucosa are key to the adaptive arm of these immunoregulatory events. DCs sample antigens in the tissue and then migrate to the draining lymph nodes, where they prime the T cells that then migrate back to the tissue as effector or regulatory cells. Intestinal DC are highly heterogeneous, and it remains unclear exactly which subsets induces the different kinds of immune response, or what signalling molecules and cellular mechanisms are involved. Here, we have studied these issues using Heligmosomoides polygyrus bakeri (Hpb) infection in mice, a model which is uniquely suited to dissecting this regulatory circuit in the gut, where it drives type 2 protective immunity at the same time as inhibiting other aspects of the immune response. Here, we characterise intestinal DC during Hpb infection for the first time. We observed a dynamical change of intestinal DC populations throughout the course of infection that correlated with altered phenotype and function. In particular, Hpb infection saw a rise in a population of CD103+ DC2 that retained a potent ability to drive Tregs during the infection and unlike CD103-DC2, had a reduced ability to induce pro-inflammatory immune response. Furthermore, transcriptional analysis revealed that TGF{beta} signalling may be responsible for some of the changes observed. This was confirmed in vitro, where supplementation TGF{beta} or Hpb-produced TGF{beta} mimic (TGM) replicated the immunomodulatory effects seen in DCs in vivo. Together, these results present a mechanistic explanation of how helminths such as Hpb may modulate host immune responses by altering the differentiation and function of local DCs. Furthermore, our work provides the basis for understanding immune homeostasis in the intestine at the molecular and cellular levels. Thus, this work fills out a crucial gap in our knowledge of basic biology underlining the DC decision between pro- and anti-inflammatory immune response in the central circuit of adaptive immune response.

immunology↗

bioRxiv2021

The spatial transcriptomic landscape of the healing intestine following damage

The intestinal barrier is composed of a complex cell network defining highly compartmentalized and specialized structures. Here, we use spatial transcriptomics (ST) to define how the transcriptomic landscape is spatially organized in the steady state and healing murine colon. At steady state conditions, we demonstrate a previously unappreciated molecular regionalization of the colon, which dramatically changes during mucosal healing. Here, we identified spatially-organized transcriptional programs defining compartmentalized mucosal healing, and regions with dominant wired pathways. Furthermore, we showed that decreased p53 activation defined areas with increased presence of proliferating epithelial stem cells. Finally, we used our resource to map transcriptomics modules associated with human diseases demonstrating that ST can be used to inform clinical practice. Overall, we provide a publicly available resource defining principles of transcriptomic regionalization of the colon during mucosal healing and a framework to develop and progress further hypotheses.

systems biology↗

bioRxiv2019

Liver X Receptor regulates Th17 and RORγt+ Treg cells by distinct mechanisms

The gastrointestinal microenvironment, dominated by dietary compounds and the commensal bacteria, is a major driver of intestinal CD4+ T helper (Th) cell differentiation. Dietary compounds can be sensed by nuclear receptors (NRs) that consequently exerts pleiotropic effects including immune modulation. However, how NRs regulate distinct intestinal Th subsets remain poorly understood. Here, we found that under homeostatic condition Liver X receptor (LXR), a sensor of cholesterol metabolites, controls ROR{gamma}t+ Treg and Th17 cells in the intestine draining mesenteric lymph node (MLN). Mechanistically, while lack of LXR signaling in CD11c+ myeloid cells led to an increase in ROR{gamma}t+ Treg, modulation of MLN Th17 was independent of LXR signaling in either immune or epithelial cells. Of note, LXR modulated only the Th17 cells, but not ROR{gamma}t+ Treg in the MLN and horizontal transfer of microbiota between LXR-/- and WT mice was sufficient to partially increase the MLN Th17 in WT mice. While LXR deficiency increased the abundance of Ruminococcaceae and Lachnospiraceae bacterial families compared to the WT littermates, microbiota ablation including ablation of SFB was not sufficient to dampen LXR-mediated expansion of MLN Th17. Altogether, our results suggest that LXR modulates ROR{gamma}t+ Treg and Th17 cells in the MLN through distinct mechanisms.

immunology↗