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Fouqueau, L.

Publications and source records attributed to Fouqueau, L..

5 recordsLinked to original sources

How Demographic Noise Shapes Phenotypic Clusters in Environmental Gradients

2Although resources are typically distributed continuously in space, the distribution of species is often organized in discrete clusters. Such clusters have been shown to spontaneously arise in population densities, even in environments with continuously varying conditions, under the phenomenon known as Turing instability. In this work, we consider two models grounded in population dynamics: a one-dimensional model based on the nonlocal Fisher-KPP equation, and a two-dimensional model involving an environmental gradient. We show that phenotypic clusters emerge in these models, and we prove that they do not emerge because of Turing instability, but because of stochasticity. We first consider initial populations that are uniformly distributed in the state space. We show that phenotypic clusters quickly emerge, and that the distances between them depend on population size, that is, on the degree of stochasticity. In addition to the effect of population size, we provide quantitative estimates of the various parameters of the model with an environmental gradient on the equilibrium distance between phenotypic clusters. Next, we start from clearly defined phenotypic clusters and modify the distance between those. We identify three regimes in the connection between population size, the initial distances between clusters, and the distances between clusters at equilibrium. Last, on the two-dimensional model, we relax the hypothesis of complete clonality by varying the effective recombination rate. We explore its effect on phenotypic clustering, and show that phenotypic clustering decays drastically with slight recombination. 1 Non-specialist summaryWe explored the origin of discrete phenotypic clusters in populations living within a continuous space. Unlike previous studies, our research highlights the importance of stochasticity in the emergence of discreteness. We demonstrate this in two types of model: the first considers a single dimension corresponding either to the phenotype or to the resource spectrum, while the second considers a geographic dimension and a phenotypic dimension. We demonstrate how population size and the other model parameters affect the stable minimum distance between coexisting clusters, as well as how the initial distance between the phenotypes influences this distance. Finally, we relax the hypothesis of complete clonality by introducing sexual reproduction and varying an effective recombination rate.

ecology↗

Deleterious mutations and selection for sex in spatially structured, diploid populations

By increasing local genetic drift and generating inbreeding, population spatial structure may have important effects on the evolutionary benefits of sexual reproduction. In this article, we consider a population structured according to the island model, and use two and three-locus analytical models and multilocus simulations to explore the selective forces acting on a modifier locus affecting the rate of sexual reproduction of facultatively sexual organisms, in the presence of recurrent deleterious mutations. The results show that population structure and selection combine to generate a local excess of heterozygotes at selected loci (negative FIS), for both partially recessive and partially dominant deleterious alleles. The linkage disequilibrium between deleterious alleles may be either negative or positive depending on their dominance coefficient, the degree of population structure and the rate of sex. These genetic associations combine with many other ones to generate indirect selection at the sex modifier locus, generally favoring intermediate rates of sex even when sex entails direct fitness costs. Multilocus simulations show that the equilibrium rate of sex increases moderately as the degree of population structure increases. However, population structure may also prevent the irreversible spread of asexual mutants when the cost of sex is strong.

evolutionary biology↗

Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations

The long-term persistence of species in the face of climate change can be evaluated by examining the interplay between selection and genetic drift in the contemporary evolution of populations. In this study, we focused on spatial and temporal genetic variation in four populations of the cold-water kelp Laminaria digitata using thousands of SNPs (ddRAD-seq). These populations were sampled from the center to the south margin in the North Atlantic at two different time points, spanning at least two generations. By conducting genome scans for local adaptation from a single time point, we successfully identified candidate loci that exhibited clinal variation, closely aligned with the latitudinal changes in temperature. This finding suggests that temperature may drive the adaptive response of kelp populations, although other factors, such as the species demographic history should be considered. Furthermore, we provided compelling evidence of positive selection through the examination of allele frequency changes over time, offering additional insights into the impact of genetic drift. Specifically, we detected candidate loci exhibiting temporal differentiation that surpassed the levels typically attributed to genetic drift at the south margin, confirmed through simulations. This finding was in sharp contrast with the lack of detection of outlier loci based on temporal differentiation in a population from the North Sea, exhibiting low levels of genetic diversity, that further decreased over time. These contrasting evolutionary scenarios among populations can be primarily attributed to the differential prevalence of selection relative to genetic drift. In conclusion, our study highlights the potential of temporal genomics to gain deeper insights into the contemporary evolution of marine foundation species in response to rapid environmental changes.

evolutionary biology↗

Influence of oceanography and geographic distance on genetic structure: how varying the sampled domain influences conclusions in Laminaria digitata

Understanding the environmental processes shaping connectivity can greatly improve management and conservation actions which are essential in the trailing edge of species distributions. In this study, we used a dataset built from 32 populations situated in the southern limit of the kelp species Laminaria digitata. By extracting data from 11 microsatellite markers, our aim was to (1) refine the analyses of population structure, (2) compare connectivity patterns and genetic diversity between island and mainland populations and (3) evaluate the influence of sampling year, hydrodynamic processes, habitat discontinuity, spatial distance and sea surface temperature on the genetic structure using a distance-based redundancy analysis (db-RDA). Analyses of population structure enabled to identify well connected populations associated to high genetic diversity, and others which appeared genetically isolated from neighboring populations and showing signs of genetic erosion verifying contrasting ecological (and demographic) status in Brittany and the English Channel. By performing db-RDA analyses on various sampling sizes, geographic distance appeared as the dominant factor influencing connectivity between populations separated by great distances, while hydrodynamic processes were the main factor at smaller scale. Finally, Lagrangian simulations enabled to study the directionality of gene flow which has implications on source-sink dynamics. Overall, our results have important significance in regard to the management of kelp populations facing pressures both from global warming and their exploitation for commercial use.

evolutionary biology↗

Non-linear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana

Heterosis describes the phenotypic superiority of hybrids over their parents in traits related to fitness. Understanding and predicting non-additive inheritance such as heterosis is crucial for evolutionary biology, as well as for plant and animal breeding. However, the physiological bases of heterosis remain debated. Moreover, empirical data in various species have shown that diverse genetic and molecular mechanisms are likely to explain heterosis, making it difficult to predict its emergence and amplitude from parental genotypes alone. In this study, we evaluated a model of physiological dominance proposed by Sewall Wright to explain the non-additive inheritance of metabolic fluxes at the cellular level. We used 450 hybrids derived from crosses among natural inbred accessions of Arabidopsis thaliana to test Wrights model for two fitness-related traits at the whole-plant level: growth rate and fruit number. We found that allometric relationships between traits constrain phenotypic variation in hybrids and inbreds to a similar extent. These allometric relationships behave predictably, in a non-linear manner, explaining up to 75% of heterosis amplitude, while genetic distance among parents at best explains 7%. Thus, our findings are consistent with Wrights model of physiological dominance on plant performance, and suggest that the emergence of heterosis is an intrinsic property of non-linear relationships between traits. Furthermore, our study highlights the potential of a geometric approach of phenotypic relationships for predicting heterosis of two major components of crop productivity and yield.

evolutionary biology↗