Search bioRxiv⌕ Search

Biology subjects

Fountas, Z.

Publications and source records attributed to Fountas, Z..

6 recordsLinked to original sources

Simulating lesion-dependent functional recovery mechanisms

Functional recovery after brain damage varies widely and depends on many factors, including lesion site and extent. When a neuronal system is damaged, recovery may occur by engaging residual (e.g., perilesional) components. When damage is extensive, recovery depends on the availability of other intact neural structures that can reproduce the same functional output (i.e., degeneracy). A systems response to damage may occur rapidly, require learning or both. Here, we simulate functional recovery from four different types of lesions, using a generative model of word repetition that comprised a default premorbid system and a less used alternative system. The synthetic lesions (i) completely disengaged the premorbid system, leaving the alternative system intact, (ii) partially damaged both premorbid and alternative systems, and (iii) limited the experience-dependent plasticity of both. The results, across 1000 trials, demonstrate that (i) a complete disconnection of the premorbid system naturally invoked the engagement of the other, (ii) incomplete damage to both systems had a much more devastating long-term effect on model performance and (iii) the effect of reducing learning capacity within each system. These findings contribute to formal frameworks for interpreting the effect of different types of lesions.

neuroscience↗

A predictive processing model of episodic memory and time perception

Human perception and experience of time is strongly influenced by ongoing stimulation, memory of past experiences, and required task context. When paying attention to time, time experience seems to expand; when distracted, it seems to contract. When considering time based on memory, the experience may be different than in the moment, exemplified by sayings like "time flies when youre having fun". Experience of time also depends on the content of perceptual experience - rapidly changing or complex perceptual scenes seem longer in duration than less dynamic ones. The complexity of interactions between attention, memory, and perceptual stimulation is a likely reason that an overarching theory of time perception has been difficult to achieve. Here, we introduce a model of perceptual processing and episodic memory that makes use of hierarchical predictive coding, short-term plasticity, spatio-temporal attention, and episodic memory formation and recall, and apply this model to the problem of human time perception. In an experiment with ~ 13, 000 human participants we investigated the effects of memory, cognitive load, and stimulus content on duration reports of dynamic natural scenes up to ~ 1 minute long. Using our model to generate duration estimates, we compared human and model performance. Model-based estimates replicated key qualitative biases, including differences by cognitive load (attention), scene type (stimulation), and whether the judgement was made based on current or remembered experience (memory). Our work provides a comprehensive model of human time perception and a foundation for exploring the computational basis of episodic memory within a hierarchical predictive coding framework. Author summaryExperience of the duration of present or past events is a central aspect of human experience, the underlying mechanisms of which are not yet fully understood. In this work, we combine insights from machine learning and neuroscience to propose a combination of mathematical models that replicate human perceptual processing, long-term memory, attention, and duration perception. Our computational implementation of this framework can process information from video clips of ordinary life scenes, record and recall important events, and report the duration of these clips. To assess the validity of our proposal, we conducted an experiment with ~ 13, 000 human participants. Each was shown a video between 1-64 seconds long and reported how long they believed it was. Reports of duration by our computational model qualitatively matched these human reports, made about the exact same videos. This was true regardless of the video content, whether time was actively judged or based on memory of the video, or whether the participants focused on a single task or were distracted - all factors known to influence human time perception. Our work provides the first model of human duration perception to incorporate these diverse and complex factors and provides a basis to probe the deep links between memory and time in human experience.

neuroscience↗

Accumulation of salient events in sensory cortex activity predicts subjective time

Human experience of time exhibits systematic, context-dependent deviations from veridical clock time; for example, time is experienced differently at work than on holiday. Here we test the proposal that differences from clock time in subjective experience of time arise because time estimates are constructed by accumulating the same quantity that guides perception: salient events. Healthy human participants watched naturalistic, silent videos of up to [~]1 minute in duration and estimated their duration while fMRI was acquired. We were able to reconstruct trial-by-trial biases in participants duration reports, which reflect subjective experience of time (rather than veridical clock time), purely from salient events in their visual cortex BOLD activity. This was not the case for control regions in auditory and somatosensory cortex, despite being able to predict clock time from all three brain areas. Our results reveal that the information arising during sensory processing of our dynamic environment provides a sufficient basis for reconstructing human subjective time estimates.

neuroscience↗

Two Ways to Change Your Mind: Effects of Intentional Strength and Motor Costs on Changes of Intention.

Changes of Mind are a striking example of the human ability to flexibly reverse decisions after commitment to an initial choice, and to change actions according to circumstances. Previous studies of Changes of Mind largely focused on perceptual choices. Here we investigate reversals of voluntary, endogenous action decisions. In a novel version of the random-dot motion task, participants moved to a target that matched both the perceived dot-motion direction and an internally-generated intention (which colour target to move to). Movement trajectories revealed whether and when participants 1) perceived a change in dot-motion direction, or additionally 2) changed the colour that they chose to move to ( Change of Intention). Changes of Intention were less frequent in participants with strong colour intentions, as indicated by high performance costs in trials where perceptual information conflicted with the endogenous intention (Exp. 1). Additionally, Changes of Intention were more frequent when motor costs of intention pursuit were high (Exp. 2). These findings were simulated using an attractor network model that continuously integrates voluntary intentions, sensory evidence, and motor costs. This argues in favour of a unifying framework for dynamic decision-making processes, in which voluntary actions emerge from a dynamic combination of internal action tendencies and external environmental factors.

neuroscience↗

Assessing Selectivity in the Basal Ganglia: The "Gearbox" Hypothesis

A plethora of evidence and theoretical work indicates that the basal ganglia (BG) might be the locus where conflicts between prospective motor programs, or actions, are being resolved. Similarly to the majority of brain regions, oscillations in this subcortical group are ubiquitous, largely driven by the cortex and associated with a number of motor symptoms in neurodegenerative diseases. However, the literature so far contains no systematic attempt to address the impact of cortical oscillations on the ability of the BG to select. In this study, we employed a state of the art spiking neural model of the BG circuitry and investigated the effectiveness of the BG as an action selection device. We found that cortical frequency, phase, dopamine and the examined time scale, all have a very important impact on the models ability to select. Our simulations resulted n a canonical profile of selectivity, termed selectivity portraits, which suggests that the cortex is the structure that determines whether selection will be performed in the BG and what strategy will be utilized. Some frequency ranges promote the exploitation of highly salient actions, others promote the exploration of alternative options, while the remaining frequencies simply halt the selection process. Based on this behaviour, we propose that the BG circuitry can be viewed as the \"gearbox\" of action selection. Coalitions of rhythmic cortical areas are able to switch between a repertoire of available BG modes which, in turn, change the course of information flow within the Cortico BG thalamo cortical loop. Dopamine, akin to \"control pedals\", either stops or initiates a decision, while cortical frequencies, as a \"gear lever\", determine whether a decision can be triggered and what type of decision this will be. Finally, we identified a selection cycle with a period of around 200ms, which was used to assess the biological plausibility of the popular cognitive architectures.

neuroscience↗

A functioning model of human time perception

Despite being a fundamental dimension of experience, how the human brain generates the perception of time remains unknown. Here, we provide a novel explanation for how human time perception might be accomplished, based on non-temporal perceptual clas-sification processes. To demonstrate this proposal, we built an artificial neural system centred on a feed-forward image classification network, functionally similar to human visual processing. In this system, input videos of natural scenes drive changes in network activation, and accumulation of salient changes in activation are used to estimate duration. Estimates produced by this system match human reports made about the same videos, replicating key qualitative biases, including differentiating between scenes of walking around a busy city or sitting in a cafe or office. Our approach provides a working model of duration perception from stimulus to estimation and presents a new direction for examining the foundations of this central aspect of human experience.

neuroscience↗