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Fontenele, A. J.

Publications and source records attributed to Fontenele, A. J..

6 recordsLinked to original sources

A molecular integrator of sleep duration and interruption

Sleep is regulated across multiple timescales. Transitions between sleep and wake happen within seconds1,2; individual sleep bouts last minutes to hours3; and homeostatic sleep need has classically been tracked across multiple bouts4. Rapid sleep-to-wake transitions are driven by identified neurons, circuits, and neuromodulators1, while slow wave activity correlates with sleep need across hours5,6. However, no signal has been shown to encode sleep history within individual sleep bouts, the timescale at which the brain must continuously monitor how much sleep has occurred and how likely waking is at any given moment. Biochemical signals downstream of sleep/wake-associated neuromodulators display slower dynamics than the neuromodulators themselves7,8, making them candidate encoders of within-bout sleep history. Here, by measuring protein kinase A substrate phosphorylation (PKA-SP) in real time in freely behaving mice7-9, we show that membrane PKA-SP decreases exponentially within each sleep bout with consistent kinetics across bouts, integrates sleep duration and sleep interruption, and continuously forecasts moment-to-moment waking probability. Following sleep deprivation, PKA-SP reaches lower levels at the end of sleep bouts, correlating with increased sleep need dissipation. These findings identify a molecular signal encoding within-bout sleep history, revealing how biochemical dynamics bridge fast arousal circuits and the slow timescale of classical sleep homeostasis.

neuroscience↗

Intra- and Interhemispheric Signatures of Criticality at the Onset of Synchronization

The cerebral cortex must flexibly alternate between locally segregated activity that supports specialization and long-range interactions that enable integration. How cortical networks balance these competing demands remains unclear. We propose that fluctuations around a critical point between ordered and disordered phases provide a natural framework to understand coordinated neuronal activity across scales. Using simultaneous spiking recordings from the left and right prefrontal cortex (PFC) of freely behaving rats, we found that signatures of criticality emerged at the onset of neuronal synchronization, both locally within individual hemispheres and globally across the combined population. Over time, cortical activity explored a continuum of intra-and inter-hemispheric synchrony levels, including states in which neurons were locally desynchronized yet maintained interhemispheric coupling. A computational model operating near its critical regime reproduced these empirical patterns, capturing the characteristic relationship between local and long-range coordination. These results suggest that cortical networks achieve flexible transitions between local and global computation by fluctuating around a critical regime.

neuroscience↗

Is critical brain dynamics more prevalent than previously thought?

The hypothesis that the brain operates near criticality has far-reaching implications for brain function and is supported by growing experimental evidence. Observations of scale-invariant brain activity agree with this hypothesis, but what about when brain activity is not scale-invariant? Should we reject the criticality hypothesis When power-laws poorly fit the data or when strong oscillations occur (dominated by a specific time scale)? Here we show several ways that criticality can be hidden from traditional data analytic approaches, leading to false negative conclusions. We use a parsimonious high-dimensional model to demonstrate how neural systems may separate different dynamical modes into different subspaces, simultaneously generating non-critical dynamics, critical oscillations, and scale-invariant avalanches. Our results point to a need for new methods capable of revealing hidden criticality and suggest that criticality could be more prevalent than previously thought, hidden in subspaces not readily revealed by standard data analyses. Does the brain operate in a dynamical regime close to a critical phase transition? This question is fundamental; the nature of neural computation is strongly impacted by whether a system is close to or far from criticality [1-5]. Evidence suggesting that the brain operates close to criticality has accumulated at an accelerating pace over the past two decades (a recent meta analysis found 31 reports in 2024 alone [2]). The two most common types of experimental evidence have been based on neuronal avalanche analysis [1, 6, 7] and long-range temporal correlation analysis [8-12]. Both these approaches examine a one-dimensional time series of collective neural activity, averaged over large populations of neurons, seeking temporally-correlated, scale-invariant fluctuations that obey specific scaling laws predicted by theory. In many cases, measurements agree with these predictions; the success and persistence of the criticality hypothesis rests on these cases. However, it is not difficult to find measurements that do not agree, with fluctuations poorly described by power-laws and scaling laws. Another common observation that, naively, seems to contradict criticality is oscillatory brain activity with a particular dominant frequency. At first glance, either the lack of power-laws or the prominence of a dominant oscillatory time scale appear to contradict the criticality hypothesis. What should we conclude from these apparently contradictory observations? Assuming that all the experimental observations are sound and valid, there are two possible explanations, not necessarily mutually exclusive. First, it could be that there are biophysical control parameters constantly in flux in the brain, causing shifts in proximity to criticality. In this scenario, non-scale-invariant data reflect true deviations from criticality and we should conclude that the brain is, at times, closer to and, at other times, further from criticality. This view has been proposed in multiple previous studies and is consistent with substantial experimental evidence [6, 13-19]. However, here we argue that there is an important, but rarely considered, second plausible explanation. It could be that traditional methods for assessing criticality can be fooled. In this case, the system dynamics could be truly critical and scale-invariant, but not visible to traditional methods. We first show why such hidden criticality is plausible considering general mathematical arguments and relevant experimental evidence. Then, we use a parsimonious computational model to demonstrate concrete examples of ground truth scale-invariant critical dynamics that are missed by traditional analyses of population average activity. Moreover, our model shows how critical oscillations, avalanches, and other non-critical modes of dynamics can coexist, by separating each different mode into a distinct low-dimensional subspace. All together, our results suggest that the combination of these various subspaces make up the high-dimensional dynamical system commonly observed in the brain. Our results reconcile multiple, seemingly discrepant, experimental observations and describe prospects for new methods that can reveal hidden criticality.

neuroscience↗

Cortex deviates from criticality during action and deep sleep: a temporal renormalization group approach

The hypothesis that the brain operates near criticality explains observations of complex, often scale-invariant, neural activity. However, the brain is not static, its dynamical state varies depending on what an organism is doing. Neurons often become more synchronized (ordered) during unconsciousness and more desynchronized (disordered) in highly active awake conditions. Are all these states equidistant from criticality; if not, which is closest? The fundamental physics of how systems behave near criticality came from renormalization group (RG) theory, but RG for neural systems remains largely undeveloped. Here we developed a temporal RG (tRG) theory for analysis of typical neuroscience data. We mathematically identified multiple types of criticality (tRG fixed points) and developed tRG-driven data analytic methods to assess proximity to each fixed point based on relatively short time series. Unlike traditional methods for studying criticality in neural systems, our tRG approach allows time-resolved measurements of distance from criticality in experiments at behaviorally relevant timescales. We apply our approach to recordings of spike activity in mouse visual cortex, showing that the relaxed, awake state is closest to criticality. When arousal shifts away from this state - either increasing in more active awake states or decreasing in deep sleep - cortical dynamics deviate from criticality.

neuroscience↗

Low dimensional criticality embedded in high dimensional awake brain dynamics

Whether cortical neurons operate in a strongly or weakly correlated dynamical regime determines fundamental information processing capabilities and has fueled decades of debate. Here we offer a resolution of this debate; we show that two important dynamical regimes, typically considered incompatible, can coexist in the same local cortical circuit by separating them into two different subspaces. In awake mouse motor cortex, we find a low-dimensional subspace with large fluctuations consistent with criticality - a dynamical regime with moderate correlations and multi-scale information capacity and transmission. Orthogonal to this critical subspace, we find a high-dimensional subspace containing a desynchronized dynamical regime, which may optimize input discrimination. The critical subspace is apparent only at long timescales, which explains discrepancies among some previous studies. Using a computational model, we show that the emergence of a low-dimensional critical subspace at large timescale agrees with established theory of critical dynamics. Our results suggest that cortex leverages its high dimensionality to multiplex dynamical regimes across different subspaces. TeaserTemporal coarse-graining reveals a low-dimensional critical subspace coexistent with a desynchronized subspace in awake cortex.

neuroscience↗

Open hardware low-cost system for behavioral experiments simultaneously with electrophysiological recordings.

A major frontier in neuroscience is to find neural correlates of perception, learning, decision making, and a variety of other types of behavior. In the last decades, modern devices allow simultaneous recordings of different operant responses and the electrical activity of large neuronal populations. However, the commercially available instruments for studying operant conditioning are expensive, and the design of low-cost chambers has emerged as an appealing alternative to resource-limited laboratories engaged in animal behavior. In this article, we provide a full description of a platform that records the operant behavior and synchronizes it with the electrophysiological activity. The programming of this platform is open source, flexible and adaptable to a wide range of operant conditioning tasks. We also show results of operant conditioning experiments with freely moving rats with simultaneous electrophysiological recordings. Specifications table O_TBL View this table: org.highwire.dtl.DTLVardef@114843corg.highwire.dtl.DTLVardef@1f59122org.highwire.dtl.DTLVardef@10b5b77org.highwire.dtl.DTLVardef@a220bdorg.highwire.dtl.DTLVardef@136c1b_HPS_FORMAT_FIGEXP M_TBL C_TBL

animal behavior and cognition↗