Biology subjects

Fiala, I.

Publications and source records attributed to Fiala, I..

3 recordsLinked to original sources

bioRxiv2026

The genome assembly of Sphaerospora molnari provides novel insights into the rapid evolution and diversification of unique lineage-specific gene groups in myxozoan parasites

BackgroundMyxozoans are ancient cnidarian parasites with highly derived genomes characterized by an extremely accelerated rate of nucleotide substitution, abundant orphan and lineage-specific genes without further characterization. Genome data are limited to two out of the four main evolutionary lineages, assemblies are highly fragmented and often show significant levels of host contamination. ResultsWe present a near chromosome-scale myxozoan genome, based on Oxford Nanopore-reads of Sphaerospora molnari, a member of the previously uncharacterized group of blood-feeding myxozoans, thereby addressing a key gap in the subphylums phylogeny. The haploid genome assembly spans 40.17 Mb in 40 contigs, harbors 14,957 genes and shows the smallest mitogenome of myxozoans (14,015 bp). Gene gain/gene loss analyses showed that myxozoans have small ancestral gene repertoires and show highly lineage-specific genome compositions. Using comparative analyses focusing on identifying unique but diversified gene compartments in S. molnari, we discovered taxonomically restricted protist genes related to red blood cell attachment (Plasmodium ETRAMPs) and surface protein variation (Plasmodium variant surface antigen families RIFIN and STEVOR, as well as Metamonada variant-specific surface proteins, VSPs), raising questions about their origins and evolution. A genomic trait shared between several myxozoans is the significant expansion of DNA transposable elements belonging to the mutator-like elements (MULEs), and while the simple copy-paste mechanism of these transposases may suggest frequent uncontrolled mutation, we demonstrate domestication of MULEs into transcription factors. Analyses of the gene fragments of chimeric MULEs (pack-MULES) of S. molnari show that these coincide with highly diversified gene groups in this lineage, including alien genes, suggesting MULEs as a driving force for gene evolution in myxozoans. ConclusionsParasitic lifestyle shifts drive exceptionally rapid genome evolution in myxozoans, primarily through nonadaptive mutation and gene transfer via MULEs, with adaptive refinement through MULE domestication and selection. In S. molnari, these processes underpin unique erythrocyte exploitation and immune evasion strategies essential for survival in the hosts bloodstream.

genomics↗

bioRxiv2024

Coevolution of Drosophila-type Timeless with Partner Clock Proteins

Drosophila-type timeless (dTIM) is established key clock protein in fruit flies, regulating the rhythmicity and light-mediated entrainment. However, as indicated by functional experiments, its contribution to the clock differs in various insects. Therefore, we conducted a comprehensive phylogenetic analysis of dTIM across animals, dated its origin, gene duplications, and losses. We identified variable and conserved protein domains, and pinpointed animal lineages that underwent the biggest changes in the dTIM sequence. While dTIM modifications are only mildly affected by changes in the PER protein, even the complete loss of PER in echinoderms had no impact on dTIM. However, changes in dTIM always co-occur with the loss of CRYPTOCHROMES or JETLAG. This is exemplified by the remarkably accelerated evolution of dTIM in phylloxera and aphids. Finally, alternative d-tim splicing, characteristic of D. melanogaster temperature-dependent function, is conserved at least to some extent in Diptera, albeit with unique alterations. Altogether, this study pinpoints major changes that shaped dTIM origin and evolution.

evolutionary biology↗

bioRxiv2022

Minicollagens play the governing role in polar capsule formation in parasitic cnidarians, the Myxozoa

Minicollagens are major structural components in the biogenesis of nematocysts in Cnidaria. Sequence mining and recent proteomic analysis of polar capsules, homologues of cnidarian nematocysts, have confirmed the presence of minicollagens in this evolutionarily ancient cnidarian endoparasitic group. Nonetheless, the role of nematocyst-associated proteins in polar capsule morphogenesis has never been studied in myxozoans. Here, we report the gene expression of three myxozoan minicollagens, ncol-1, ncol-3, and the recently identified ncol-5, during the intrapiscine development of Myxidium lieberkuehni, the myxozoan parasite of Northern pike Esox lucius. Moreover, we determined the abundance and localisation of Ncol-1 and Ncol-5 proteins in the developing myxozoan stages by western blotting and by immunofluorescence and immunogold electron microscopy. We found that expression of minicollagens was spatiotemporally restricted to developing polar capsules in sporogonic stages. Intriguingly, Ncol-1 and Ncol-5 were localised as major components of the polar capsule wall and polar tubule. These results support the common origin of nematocysts and myxozoan polar capsules. Furthermore, our findings have practical implications for a more accurate identification of developmental stages of myxozoan parasites.

developmental biology↗