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bioRxiv2019

Larval thermal characteristics of multiple ixodid ticks underlie their range dynamics

Temperature is a major factor that impacts tick populations by limiting geographic range of different species. Little is known about the thermal characteristics of these pests outside of a few studies on survival related to thermal tolerance. In this study, thermal tolerance limits, thermal preference, impact of temperature on metabolic rate, and temperature-activity dynamics were examined in larvae for six species of ixodid ticks. Tolerance of low temperatures ranged from -15 to -24{degrees}C with Dermacentor andersoni surviving at the lowest temperatures. High temperature survival ranged from 41 to 47 {degrees}C, with Rhipicephalus sanguineus having the highest upper lethal limit. Ixodes scapularis showed the lowest survival at both low and high temperatures. Thermal preference temperatures were tested from 0-41{degrees}C. D. variabilis exhibited a significant distribution of individuals in the lower temperatures, while the majority of other species gathered around 20-30{degrees}C. Activity was measured from 10-60{degrees}C, and the highest activity was observed in most species was near 30{degrees}C. Metabolic rate was the highest for most species around 40{degrees}C. Both activity and metabolic rate dropped dramatically at temperatures below 10{degrees}C and above 50{degrees}C. In summary, tick species vary greatly in their thermal characteristics, and our results will be critical to predict distribution of these ectoparasites with changing climates.

physiology↗

bioRxiv2017

Biocuration as an undergraduate training experience: Improving the annotation of the insect vector of Citrus greening disease

The Asian citrus psyllid (Diaphorina citri Kuwayama) is the insect vector of the bacterium Candidatus Liberibacter asiaticus (CLas), the pathogen associated with citrus Huanglongbing (HLB, citrus greening). HLB threatens citrus production worldwide. Suppression or reduction of the insect vector using chemical insecticides has been the primary method to inhibit the spread of citrus greening disease. Accurate structural and functional annotation of the Asian citrus psyllid genome, as well as a clear understanding of the interactions between the insect and CLas, are required for development of new molecular-based HLB control methods. A draft assembly of the D. citri genome has been generated and annotated with automated pipelines. However, knowledge transfer from well-curated reference genomes such as that of Drosophila melanogaster to newly sequenced ones is challenging due to the complexity and diversity of insect genomes. To identify and improve gene models as potential targets for pest control, we manually curated several gene families with a focus on genes that have key functional roles in D. citri biology and CLas interactions. This community effort produced 530 manually curated gene models across developmental, physiological, RNAi regulatory, and immunity-related pathways. As previously shown in the pea aphid, RNAi machinery genes putatively involved in the microRNA pathway have been specifically duplicated. A comprehensive transcriptome enabled us to identify a number of gene families that are either missing or misassembled in the draft genome. In order to develop biocuration as a training experience, we included undergraduate and graduate students from multiple institutions, as well as experienced annotators from the insect genomics research community. The resulting gene set (OGS v1.0) combines both automatically predicted and manually curated gene models. All data are available on https://citrusgreening.org/.

genomics↗