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Farkas, T.

Publications and source records attributed to Farkas, T..

3 recordsLinked to original sources

Discovery and Characterization of a Hydroxypyridone-3-carboxamide Analog as an Antiviral Lead against Orthopoxviruses

Orthopoxviruses remain a persistent global health concern due to the ongoing circulation of mpox, the possibility of the re-emergence of smallpox, and the threats posed by many poxviruses that infect animals and/or humans. The limited availability of antiviral drugs, the unproven efficacy in humans, and the emergence of resistant mutants underscore the need for new and better therapeutics. In this study, we identify and characterize ZW-2038, a hydroxypyridone-3-carboxamide analog, as an antiviral compound against vaccinia virus (VACV), monkeypox virus (MPXV), and cowpox virus (CPXV). Discovered through a focused in-house small-molecule screen, ZW-2038 exhibited low micromolar potency and high selectivity in primary human fibroblasts. The compound also reduced viral replication under physiomimetic conditions including human and monkey intestinal organoids (enteroids) and ex vivo mouse lung tissue models. Mechanistically, ZW-2038 suppresses VACV DNA replication and downstream post-replicative gene expression, albeit without inhibiting MPXV resolvase (Mpr) in vitro. These findings, along with in vitro safety profiling and mice pharmacokinetics studies, characterize ZW-2038 as a promising yet suboptimal antiviral lead against orthopoxviruses warranting future development.

microbiology↗

Recovirus NS1-2 has viroporin activity that induces aberrant cellular calcium signaling to facilitate virus replication

Enteric viruses in the Caliciviridae family cause acute gastroenteritis in humans and animals, but the cellular processes needed for virus replication and disease remain unknown. A common strategy among enteric viruses, including rotaviruses and enteroviruses, is to encode a viral ion channel (i.e., viroporin) that is targeted to the endoplasmic reticulum (ER) and disrupts host calcium (Ca2+) homeostasis. Previous reports have demonstrated genetic and functional similarities between the nonstructural proteins of caliciviruses and enteroviruses, including the calicivirus NS1-2 protein and the 2B viroporin of enteroviruses. However, it is unknown whether caliciviruses alter Ca2+ homeostasis for virus replication or whether the NS1-2 protein has viroporin activity like its enterovirus counterpart. To address these questions, we used Tulane virus (TV), a rhesus enteric calicivirus, to examine Ca2+ signaling during infection and determine whether NS1-2 has viroporin activity that disrupts Ca2+ homeostasis. We found that TV disrupts increases Ca2+ signaling during infection and increased cytoplasmic Ca2+ levels is important for efficient replication. Further, TV NS1-2 localizes to the endoplasmic reticulum (ER), the predominant intracellular Ca2+ store and the NS2 region has characteristics of a viroporin domain (VPD). NS1-2 had viroporin activity in a classic bacterial functional assay and caused aberrant Ca2+ signaling when expressed in mammalian cells, but truncation of the VPD abrogated these functions. Together, our data provide new mechanistic insights into the function of the NS2 region of NS1-2 and show that like many other enteric viruses, enteric caliciviruses also exploit host Ca2+ signaling to facilitate their replication.\n\nImportanceTulane virus is one of many enteric caliciviruses that cause acute gastroenteritis and diarrheal disease. Globally, enteric caliciviruses affect both humans and animals and result in >65 billion dollars per year in treatment and healthcare-associated costs, thus imposing an enormous economic burden. Recent progress has resulted in several cultivation systems (B cell, enteroid and zebrafish larvae) to study human noroviruses, but mechanistic insights into the viral factors and host pathways important for enteric calicivirus replication and infection are largely still lacking. Here we used Tulane virus, a calicivirus that is biologically similar to human noroviruses and can be cultivated in conventional cell culture, to identify and functionally validate NS1-2 as an enteric calicivirus viroporin. Viroporin-mediated calcium signaling may be a broadly utilized pathway for enteric virus replication, and its existence within caliciviruses provides a novel approach to developing antivirals and comprehensive therapeutics for enteric calicivirus diarrheal disease outbreaks.

microbiology↗

DNA-PKcs-mediated phosphorylation of AMPKγ1 regulates lysosomal AMPK activation by LKB1

Autophagy is a central component of the cytoprotective cellular stress response. To enlighten stress-induced autophagy signaling, we screened a human kinome siRNA library for regulators of autophagic flux in MCF7 human breast carcinoma cells and identified the catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) as a positive regulator of basal and DNA damage-induced autophagy. Analysis of autophagy-regulating signaling cascades placed DNA-PKcs upstream of the AMP-dependent protein kinase (AMPK) and ULK1 kinase. In normal culture conditions, DNA-PKcs interacted with AMPK and phosphorylated its nucleotide-sensing {gamma}{gamma}1 subunit at Ser-192 and Thr-284, both events being significantly reduced upon AMPK activation. Alanine substitutions of DNA-PKcs phosphorylation sites in AMPK{gamma}{gamma}1 reduced AMPK activation without affecting its nucleotide sensing capacity. Instead, the disturbance of DNA-PKcs-mediated phosphorylation of AMPK{gamma}{gamma} inhibited the lysosomal localization of the AMPK complex and its starvation-induced association with LKB1. Taken together, our data suggest that DNA-PKcs-mediated phosphorylation of AMPK{gamma}{gamma} primes AMPK complex to the lysosomal activation by LKB1 thereby linking DNA damage response to autophagy and cellular metabolism.

cell biology↗