Biology subjects

Fabris, F.

Publications and source records attributed to Fabris, F..

6 recordsLinked to original sources

bioRxiv2025

Targeting Neuromuscular Junction Regeneration is a Therapeutic Strategy in ALS

Instability and denervation of the neuromuscular junction (NMJ) are early events in Amyotrophic Lateral Sclerosis (ALS), likely reflecting a progressive decline in the regenerative capacity of motor neurons (MNs) and their environment. To investigate this, we evaluated NMJ regeneration throughout disease progression in SOD1G93A mice following reversible axon terminal degeneration induced by -Latrotoxin. In parallel, we monitored the expression of CXCR4, a GPCR upregulated during axonal regeneration, and tested whether its pharmacological activation could mitigate ALS- related functional decline. We found that NMJ regenerative capacity is largely preserved during pre- and early symptomatic stages, and remains active in subsets of NMJs even at later stages. CXCR4 is expressed at axon terminals from early disease stages, declining only at end stage. Its expression is conserved across ALS models, including SOD1G93A pigs, hiPSC-derived MN with ALS mutations, and biopsies from sporadic ALS patients. CXCR4 stimulation improved motor function, NMJ innervation, MN survival, and respiratory performance in ALS mice, and axon outgrowth in iPSC-derived MN. These findings identify the NMJ and CXCR4 as viable therapeutic targets in ALS.

neuroscience↗

bioRxiv2024

Low Intestinal Doses of Botulinum Neurotoxins types A and B favour infection by Salmonella and Shigella without the flaccid paralysis of botulism

Botulism is a life-threatening disease characterized by a descending flaccid paralysis caused by a protein neurotoxin (BoNT) released by different anaerobic bacterial species of the genus Clostridium. The paralysis results from blockade of neurotransmitter release from the terminals of peripheral cholinergic, skeletal and autonomic neurons exerted by BoNT through the cleavage of SNARE proteins, which are essential for neuroexocytosis. Here, we investigated the effect of different doses of BoNT serotypes A and B, the serotypes most commonly associated with human botulism, on enteric nervous system neurons which play an important role in gut health and physiology. We found that BoNT/A and BoNT/B enter cholinergic neurons where they cleave SNARE proteins even at doses that do not cause signs of flaccid neuroparalysis. However, these low BoNT doses favour the invasion and infection of the mouse body by Salmonella thyphimurium and Shigella flexneri. This may have significant animal health implications.

neuroscience↗

bioRxiv2023

Agonists of melatonin receptors strongly promote the functional recovery from the neuroparalysis induced by neurotoxic snakes

Snake envenoming is a major, but neglected, tropical disease. Among venomous snakes, those inducing neurotoxicity such as kraits (Bungarus genus) cause a potentially lethal peripheral neuroparalysis with respiratory deficit in a large number of people each year. In order to prevent the development of a deadly respiratory paralysis, hospitalization with pulmonary ventilation and use of antivenoms are the primary therapies currently employed. However, hospitals are frequently out of reach for envenomated patients and there is a general consensus that additional, non-expensive treatments, deliverable even long after the snake bite, are needed. Traumatic or toxic degenerations of peripheral motor neurons cause a neuroparalysis that activates a pro-regenerative intercellular signaling program taking place at the neuromuscular junction (NMJ). We recently reported that the intercellular signaling axis melatonin-melatonin receptor 1 (MT1) plays a major role in the recovery of function of the NMJs after degeneration of motor axon terminals caused by massive Ca2+ influx. Here we show that the small chemical MT1 agonists: Ramelteon and Agomelatine, already licensed for the treatment of insomnia and depression, respectively, are strong promoters of the neuroregeneration after paralysis induced by krait venoms in mice, which is also Ca2+ mediated. The venom from a Bungarus species representative of the large class of neurotoxic snakes (including taipans, coral snakes, some Alpine vipers in addition to other kraits) was chosen. The functional recovery of the NMJ was demonstrated using electrophysiological, imaging and lung ventilation detection methods. According to the present results, we propose that Ramelteon and Agomelatine should be tested in human patients bitten by neurotoxic snakes acting presynaptically to promote their recovery of health. Noticeably, these drugs are commercially available, safe, non-expensive, have a long bench life and can be administered long after a snakebite even in places far away from health facilities. SynopsisSnakebite envenomings cause important tropical human diseases that often include a lethal muscle paralysis. Current treatments consist in hospitalization and antivenoms, which are not always quickly accessible to victims. In fact, these snakebites take place mainly in rural and low income countries. In this work, researchers discovered, in mice, a novel function of melatonin and of its type 1 receptor in promoting functional recovery after snake-induced peripheral neuroparalysis with nerve terminal degeneration. In particular, researchers found that drugs approved for the treatment of insomnia (Ramelteon) and depression (Agomelatine), activate melatonin receptor and promote the functional recovery after a krait venom induced paralysis. These drugs are on sell in pharmacies, are safe and stable, and are ready to be tried for promoting the recovery from peripheral neuroparalysis in human victims bitten by neurotoxic snakes, even without hospitalization.

pharmacology and toxicology↗

bioRxiv2020

Intermittent ERK oscillations downstream of FGF in mouse embryonic stem cells

Signal transduction networks process extracellular signals to guide cell fate decisions such as to divide, differentiate, or die. These networks can generate characteristic dynamic activities that are shaped by their cell-type specific architecture. The differentiation of pluripotent cells is controlled by FGF/ERK signaling. However, the dynamic activity of the FGF/ERK signaling network in this context remains unexplored. Here we use live cell sensors in wild type and Fgf4 mutant mouse embryonic stem cells to measure ERK dynamic activity in single cells, in response to defined ligand concentrations. We find that ERK activity oscillates in embryonic stem cells. Single cells can transit between oscillatory and non-oscillatory behavior, leading to heterogeneous dynamic activities in the population. Oscillations become more prevalent with increasing FGF4 dose, while maintaining a robust characteristic timescale. Our results suggest that FGF/ERK signaling operates in the vicinity of a transition point between oscillatory and non-oscillatory dynamics in embryonic stem cells.

developmental biology↗

bioRxiv2019

Ageing Transcriptome Meta-Analysis Reveals Similarities Between Key Mammalian Tissues

1Understanding the expression changes that come with age is an important step in understanding the ageing process as a whole. By combining such transcriptomic data with other sources of information, for instance protein-protein interaction (PPI) data, it is possible to make inferences about the functional changes that occur with age. To address this, we conducted a meta-analysis on 127 publicly available microarray and RNA-Seq datasets from mice, rats and humans, to identify genes that are commonly differentially expressed with age in mammals. We also conducted analyses on subsets of these datasets, to produce transcriptomic signatures for brain, heart and muscle tissues, all of which are important tissues in the pathophysiology of ageing. This approach identified the transcriptomic signatures of the ageing system, as well as brain, heart and muscle tissues. We then applied enrichment analysis and machine learning to functionally describe those signatures. This revealed a typical ageing signature including the overexpression of immune and stress response genes and the underexpression of metabolic and developmental genes. Further analysis of the ageing expression signatures revealed that genes differentially expressed with age tend to be broadly expressed across tissues, rather than be tissue-specific, and that the ageing expression signatures (particularly the overexpressed signatures) of the whole system, brain and muscle tend to include genes that are central in PPI networks. We also show that genes underexpressed in the brain are highly central in a co-expression map, suggesting that underexpression of these genes may play a part in cognitive ageing. In sum, we show numerous functional similarities between the ageing transcriptomes of these important tissues, a broad non-specific expression pattern in genes differentially expressed with age, along with altered network properties of these genes in both a PPI and co-expression network.

bioinformatics↗

bioRxiv2019

PICKER-HG: a web server using random forests for classifying human genes into categories

MotivationOne of the main challenges faced by biologists is how to extract valuable knowledge from the data produced by high-throughput genomic experiments. Although machine learning can be used for this, in general, machine learning tools on the web were not designed for biologist users. They require users to create suitable biological datasets and often produce results that are hard to interpret.\n\nObjectiveOur aim is to develop a freely available web server, named PerformIng Classification and Knowledge Extraction via Rules using random forests on Human Genes (PICKER-HG), aimed at biologists looking for a straightforward application of a powerful machine learning technique (random forests) to their data.\n\nResultsWe have developed the first web server that, as far as we know, dynamically constructs a classification dataset, given a list of human genes with annotations entered by the user, and outputs classification rules extracted of a Random Forest model. The web server can also classify a list of genes whose class labels are unknown, potentially assisting biologists investigating the association between class labels of interest and human genes.\n\nAvailabilityhttp://machine-learning-genomics.com/

bioinformatics↗