Search bioRxiv⌕ Search

Biology subjects

Evans, J.

Publications and source records attributed to Evans, J..

At least 19 recordsLinked to original sources

A Lenalidomide-Inducible Suicide Switch for Gene- and Cell-Based Therapy

Genetically modified immune effector cells, including chimeric antigen receptor (CAR) T cells, have emerged as transformative anti-cancer agents. However, these autonomous, living therapies are limited by difficult-to-control hyperactivation toxicities. To achieve their full potential as therapies for a broader range of diseases, CAR T cells must target novel antigens and integrate further potency enhancements that raise the possibility of novel and intensified toxicities. High performance safety systems are needed to restrain these highly active next-generation gene- and cell-based therapies. Cell therapy suicide switches remain infrequently used, and are currently limited by inaccessible controller drugs, incomplete cell depletion, fitness cost, and immunogenicity. To address these issues, we engineered a fully human sequence-based cell therapy suicide switch based on the overexpression of Caspase-Activated DNase (CAD) and its stoichiometric chaperone/inhibitor ICAD fused to a lenalidomide-inducible degron. Acute destabilization of ICAD with the broadly available, off-patent molecular glue degrader drug lenalidomide uncaged CAD to induce DNA damage and cell death. By this degradable cage mechanism, the ICAD-CAD suicide switch achieved long-term expression in primary human T cells without detectable leakiness, and deep drug-induced cell depletion. The ICAD-CAD switch was generalizable to alternative acute destabilization systems. Genome-wide CRISPR screening established the necessity of CAD and the lenalidomide-interacting E3 ubiquitin ligase substrate adaptor CRBN for switch function. When co-delivered with a CAR, ICAD-CAD CAR T cells retained effector functions and could be rapidly depleted with lenalidomide.

synthetic biology↗

Using HD-DOT in precision accuracy microgenetic research designs to measure change over time in speech, language, and hearing clinical populations

Documenting change is fundamental to understanding the process of intervention among individuals with communication disorders. This technical report demonstrates the clinical applicability of wearable fNIRS systems and the NeuroDOT processing pipelines for examining within-person cortical dynamics of learning. Using a microgenetic research design and a dense sampling approach, we examined changes in the prefrontal cortical hemodynamic response in an adult female participant who completed the same spoken sentence repetition and auditory fixation tasks across eight sessions. In addition to behavioral accuracy, hemodynamic data were collected with a continuous-wave, multi-channel fNIRS system (NIRSport2) using a prefrontal 20-channel optode montage. Data were processed using NeuroDOT (https://www.nitrc.org/projects/neurodot) (Eggebrecht & Culver, 2019) to: (i) standardize signal quality across the sessions to quantify motion levels and to ensure standardized brain map specificity, (ii) to examine both channel space fluctuations in the hemodynamic response and map changes in cortical activation patterns over the sessions. The signal quality met the predefined criteria for only the first five sessions. Participants repetition accuracy did not improve over the five sessions. Channel-wise analysis revealed that HbO concentration differs significantly over right and left hemisphere channels over the course of the five sessions for the Sentence Repetition task, but not for the Auditory Fixation condition. Brain maps revealed qualitative differences in the pattern of prefrontal cortical activation across the five sessions. Behavioral assessments do not fully capture what occurs during speech repetition tasks, and leveraging neuroimaging can help identify and discriminate between disordered and neurotypical populations.

neuroscience↗

Age and IFN-β-induced changes in glial morphometry can be captured by in vivo diffusion-weighted magnetic resonance spectroscopy.

IntroductionNeuroinflammation is increasingly implicated in age-related cognitive decline, neurodegeneration and neuropsychiatric disorders. During systemic inflammation, microglia are rapidly activated, simultaneously changing their shape and releasing cytokines that perturb neuronal function. This change in glial morphology alters their intracellular diffusion properties and provides a potentially measurable signature of their activation state. Diffusion-weighted magnetic resonance spectroscopy (dMRS) shows promise in detecting these changes. Here, we combined IFN-{beta} challenge with dMRS to assess changes in metabolite diffusion in healthy young and older adults. We hypothesised that IFN-{beta} would increase diffusion of choline-containing compounds (tCho) but not N-acetylaspartate + N-acetylaspartylglutamate (tNAA), age would be associated with an increase in tCho diffusion and concentration, lower tNAA concentration and increased effects of IFN-{beta}. MethodsWe recruited 15 young (mean 25.2 {+/-} 5.1 years, 6 male) and 15 older (mean 62.6 {+/-} 4.1 years, 5 male) healthy volunteers, each tested twice, once after IFN-{beta} and once after placebo. Physiological and behavioural responses were recorded hourly, and blood samples taken at baseline, 4 and 6.5 hours post-injection. dMRS occurred at [~]4.5 hours at 3T, using a semi-LASER sequence with four diffusion weightings (b = 0 and 3 x 3500 s/mm{superscript 2}), in 4.5 cm3 VOIs in the left thalamus and corona radiata. Apparent Diffusion Coefficients (ADCs) of tCho, tNAA and creatine+phosphocreatine (tCr) were calculated from averaged spectra using custom MATLAB software. ResultsIFN-{beta} administration produced a significant increase in thalamic tCho diffusivity compared with placebo (t(28) = -2.15, p = 0.040), with no change in tNAA or tCr ADC, or tCho concentrations. IFN-{beta}-related increases in tCho ADC positively correlated with increases in circulating IL-6 (R{superscript 2} = 0.14, p = 0.040). Age-related effects were also evident during the placebo condition, with older participants showing lower thalamic tNAA diffusivity (t(27) = 2.86, p = 0.008), lower tNAA/tCr in both grey and white matter (grey: t(27) = 2.49, p = 0.023; white: t(27) = 2.94, p = 0.007), and higher white-matter tCho/tCr (t(27) = -2.23, p = 0.034). ConclusiondMRS detected IFN-{beta}-induced increases in thalamic tCho diffusivity corresponding with peripheral inflammation, supporting its sensitivity to acute inflammation-induced changes in glial morphology. Age-related differences in tNAA diffusion and concentrations further highlight metabolite-specific ageing effects. HighlightsO_LIdMRS detects increased thalamic total choline diffusivity following IFN-{beta}-induced inflammation. C_LIO_LIIFN-{beta}-related changes in total choline diffusivity are associated with peripheral IL-6 responses. C_LIO_LIAgeing is linked to reduced NAA diffusion and higher white-matter tCho/tCr C_LIO_LIdMRS is sensitive to inflammation- and age-related neurochemical changes in vivo. C_LI

immunology↗

Trade-offs between photosynthetic capacity, mesophyll conductance stability and leaf anatomy shape heat and water deficit resilience in Gossypium.

O_LIMesophyll conductance (gm) governs CO2 diffusion to Rubisco and is a key determinant of photosynthetic performance, yet the mechanisms underlying its sensitivity to heat and water stress remain unresolved. C_LIO_LIWe quantified gm temperature responses across diverse Gossypium species and examined anatomical drivers of gm plasticity in cultivated cotton (G. hirsutum) and the wild Australian species G. bickii under elevated temperature and soil water deficit. C_LIO_LISpecies exhibited contrasting gm strategies: G. hirsutum exhibited high gm and carbon assimilation near thermal optima but showed greater sensitivity under combined heat and water deficit, whereas G. bickii maintained comparatively stable gm and photosynthesis across stress conditions. C_LIO_LIUnder water deficit, structural adjustments in G. hirsutum (increased leaf porosity, cell wall thickness and mesophyll surface exposure to intercellular airspaces) were insufficient to sustain gm, suggesting that liquid-phase resistances impose dominant constraints on CO2 diffusion under extreme climatic stress. C_LIO_LIThese results identify gm as a dynamic, multi-component trait and a key physiological vulnerability in cotton, shaped by coordinated anatomical characteristics and potentially cell wall properties and membrane-associated processes, with major implications for mechanistic photosynthesis modelling and improving climate resilience in cotton and other C3 species. C_LI

plant biology↗

Innate Defense Mechanisms Against Nosema ceranae in Hygienic Honey Bee (Apis mellifera) Colonies

The honey bee colony (Apis mellifera) acts as a superorganism, with a dual immune system that operates at the individual and social level. However, the linkages between immune mechanisms across the two levels remain poorly understood, despite the relevance for developing effective breeding strategies to improve honey bee disease resistance. Hygienic behavior involving the removal of unhealthy brood is a key component of honey bee social immunity and is highly effective at limiting parasites and pathogens in the colony. While this form of hygienic behavior can reduce brood diseases, parasites infecting adult bees primarily, such as Nosema ceranae, are not directly impacted by the behavior. However, when using the Unhealthy Brood Odor (UBeeO) assay to quantify hygienic behavior performance, hygienic colonies have been shown to maintain lower Nosema spp. loads over time and overall compared to non-hygienic colonies. To investigate the mechanisms driving reduced Nosema spp. in hygienic colonies, we conducted a series of field and lab experiments to test the innate immune performance of individual bees. We evaluated several factors across hygienic and non-hygienic bees including (1) differences in N. ceranae infection levels, (2) survival probability, (3) Vitellogenin and Hymenoptaecin gene expression, and (4) amount of N. ceranae inoculant consumed. We found that hygienic bees consumed less of the inoculant, exhibited upregulated Vitellogenin gene expression at peak N. ceranae infection, showed a positive relationship between Hymenoptaecin gene expression and N. ceranae infection levels, and had greater survivability when infected with N. ceranae, compared to non-hygienic bees. Here, we present new findings that link colony hygienic behavior performance to individual-level resistance and tolerance mechanisms in response to N. ceranae, suggesting broader implications for the success of selective breeding programs targeting hygienic traits.

immunology↗

Somatic TYK2 activating mutations in tumor-infiltrating T cells promote anti-cancer immunity

Cancer cells evolve to increase fitness and evade the immune system, but it is not clear if tumor infiltrating lymphocytes (TILs) undergo selection for somatic mutations that augment anti-cancer immunity. Using single molecule whole exome sequencing in TILs, we identified somatic mutations in Tyrosine-protein kinase 2 (TYK2), several of which increased TYK2 phosphorylation, JAK-STAT signaling, and interferon gamma signaling. Among these mutations, TYK2D810V was recurrently observed in patients with diverse cancer types. In vitro, TYK2D810V enhanced T cells effector functions and cytokine production. We generated mice with a germline Tyk2D807V mutation that recapitulated the human TYK2D810Vmutation. These mice were healthy and did not develop autoimmune disorders. However, they possessed enhanced anti-tumor effects in the context of syngeneic and autochthonous cancer models. Adoptive therapy with Tyk2D807V CD8 T cells also decreased cancer growth. Thus, naturally occurring mutations in non-malignant lymphocytes can antagonize cancer and inspire new immunotherapies strategies.

cancer biology↗

Mismatch-Assisted Toehold Exchange Cascades for Magnetic Nanoparticle-Based Nucleic Acid Diagnostics

Sensitive, simple, and rapid detection of nucleic acid sequences at point-of-care (POC) settings is still an unmet quest. Magnetic readout assays combined with toehold-mediated strand displacement (TMSD)-based circuits are amplification- and wash-free, essential features for contributing to this demand. Nevertheless, nonenzymatic TMSD circuits are slow with low sensitivity for early disease diagnostics. Here, we propose novel mismatch-assisted toehold exchange (MATE) magnetic cascades, wherein magnetic susceptibility increases by dissociation of magnetic nanoparticles (MNPs) from engineered magnetic clusters upon detecting nucleic acid target in solution. The MATE relies on the generation of an allosteric toehold (TH) by spontaneous dissociation to efficiently recycle the target, amplify magnetic signal output, and enhance the assays kinetics. We show that introducing a mismatch in the allosteric TH domain enhances the overall declustering kinetics 7-fold, as also confirmed with oxDNA simulations, with the largest effect gained for the mismatch closest to where the branch migration by the target ends. By integrating MATE into magnetic diagnostics cascades, we demonstrate 3.6-fold better limit-of-detection (LoD) and 12-fold shorter assay time compared to our previous circuit design. Our work makes a major leap towards bringing MNP-based diagnostics much closer to the clinical POC settings by offering a simple, rapid, isothermal, and nonenzymatic assay workflow.

biochemistry↗

LONGITUDINAL CHANGES IN WHITE MATTERMICROSTRUCTURAL STATUS FOLLOWING QUANTIFIEDHEAD-BALL IMPACTS IN SOCCER: A PRELIMINARY,PROSPECTIVE STUDY.

Repetitive, sub-concussive head impacts have been associated with increased chronic traumatic encephalopathy (CTE) incidence. CTE diagnosis traditionally relies on post-mortem examination, which limits precise correlation between cause- and-effect. This prospective study embraced innovative diffusion magnetic resonance imaging, which enables in vivo quantification of acute, sub-acute and chronic changes in brain tissue microstructure. This approach was used to evaluate changes in white matter microstructural status at intervals up to 180 days following a specified soccer heading protocol. This study was approved by the university ethics panel. Twelve males (21 - 23 years) were recruited to the study and gave signed, informed consent. Six Intervention participants were university-level soccer players, with 6 Control participants drawn from university-level non-contact sports. Multi-shell diffusion-weighted MRI data were acquired on a 3T Siemens Connectom (300mT/m) scanner using the HARDI protocols. Baseline measures of fractional anisotropy, mean diffusivity and mean kurtosis were acquired at day 0. The Intervention cohort then performed 10 soccer headers in a laboratory, with acceleration-time data captured using an instrumented mouthguard and post-processed to report common metrics. The Intervention group was then re-scanned at day 1 (n = 6), day 90 (n = 5) and day 180 (n = 4). The Control group was re-scanned at day 1 (n = 6) and day 180 (n = 3). Many brain tracts were identified as having significant (p < 0.05) changes in white matter microstructural changes at day 90, which correlated strongly with the magnitude of head impact. A smaller number of tracts had changes at day 1 and day 180. These results indicate that, within this pilot population, the magnitude of repeated soccer headers appears to correlate with the magnitude of white matter microstructural change. Additional investigation is required to determine whether the effect of such an intervention influences long-term brain health risk.

bioengineering↗

A novel framework for assessing the robustness of genomic animal models applied to a wild marine fish

In highly dispersive taxa, gene flow can homogenise genetic variation over broad spatial and temporal scales. However, phenotypic differentiation can still arise when heritable genetic variation is available to selection and (or) when organisms exhibit plasticity. Disentangling heritable versus non-heritable components of variation is possible using genomic animal models, but this approach has been underused in wild organisms. We investigated head shape variation in the marine cryptobenthic fish Bathygobius cocosensis, a highly dispersive species occupying heterogeneous environments. Head shape, a diet-related trait, is spatially structured in Australian populations. We curated a unique dataset comprising genotypic, phenotypic, and environmental variation to: (1) contrast the scales over which genetic and phenotypic variation are structured; and (2) quantify heritable versus non-heritable contributions to head shape variation using genomic animal models and comparisons between FST, PST, and QST. At macrogeographic scales (hundreds of kilometres) and over time (2 years), phenotypic differentiation (0.0001 [&le;] PST [&le;] 0.47) exceeded both genomic and additive genetic differentiation (0.001 [&le;] FST[&le;] 0.004 and 0.00001 [&le;] QST [&le;] 0.004, respectively). This suggests head shape variation may primarily reflect (non-heritable) plastic responses, rather than (heritable) adaptive genetic changes in mean head shape. At microgeographic scales, associations between head shape and tide pool variables were temporally variable, indicating that local environmental conditions may structure phenotypes within populations. Overall, this study highlights the value of genomic animal models for disentangling heritable and non-heritable components of phenotypic variation in dispersive marine taxa. It provides an integrative analysis linking genetic, phenotypic, and environmental variation in a cryptobenthic fish, highlighting how phenotypic divergence can emerge without strong genetic differentiation, and challenging the common assumption that phenotypic divergence necessarily implies adaptation.

genomics↗

Urbanization as an environmental filter for megacolorful birds

The colorfulness of bird plumage plays a crucial role in intraspecific (e.g. sexual display) and interspecific ecological interactions (e.g. camouflage and predation). Consequently, bird plumage colorfulness can affect the success of individuals in novel environments, such as urban settings. However, our understanding of the impact of urbanization on the plumage colorfulness of birds, especially in tropical regions, is limited. To address this gap, we analyzed whether urban environments serve as environmental filters for plumage colorfulness in passerine (Passeriformes) bird assemblages across the biomes of Brazil, the worlds largest tropical country. Using generalized linear models that incorporate bird checklists, functional traits, and a continuous urbanization metric, we show that urbanization increases specific traits that are associated with plumage colorfulness in bird assemblages (i.e. proportion of omnivores, proportion of larger species, and average sexual dichromatism). While the average colorfulness of bird assemblages did not change with increasing urbanization, a negative correlation between the presence of megacolorful birds (i.e. the 5% most colorful species) and urbanization was detected, particularly in biomes with high urban concentrations, such as the Atlantic Forest and the Caatinga. This suggests that urban environments can be unsuitable for the most colorful tropical bird species. Our study additionally shows that factors like body size, diet, and sexual dichromatism play a mediating role in the urban filtering process. Our analyses provide insights into how urban environments act as environmental filters and can help to better understand the consequences of urbanization for tropical biodiversity.

ecology↗

MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics

SummaryFermented foods, which contain a diverse array of microbial metabolites and microbes, are increasingly recognized as potential mediators of human immune and metabolic health. While there is growing interest in characterizing the microbial landscape of fermented foods, current characterization methods typically rely on 16S rRNA sequencing or marker gene-based methods, which have low taxonomic resolution and cannot functionally characterize microbes. Here we describe MiFoDB-workflow, a metagenomics workflow for the identification of microbes associated with food fermentation based on a primary database of 675 genomes of bacteria, yeast, fungi, and common fermented food substrates. We constructed the database using metagenome-assembled genomes (MAGs) derived from metagenomic sequencing of 90 fermented foods, combined with previously-published fermented food-derived MAGs, and relevant genomes deposited in RefSeq and GenBank genomes. We demonstrate the utility of MiFoDB for high confidence genome identification, including discovery of previously uncharacterized species, strain tracking across related foods, and functional analysis in fermented foods of different substrates. The workflow streamlines high-confidence characterization of the diversity of the fermented food landscape including novel ferments, and allows strain-level tracking of microbes across time, substrates, and producers.

microbiology↗

Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation

Fermentation is resurgent around the world as people seek healthier, more sustainable, and tasty food options. This study explores the microbial ecology of miso, a traditional Japanese fermented paste, made with novel regional substrates to develop new plant-based foods. Eight novel miso varieties were developed using different protein-rich substrates: yellow peas, Gotland lentils, and fava beans (each with two treatments: standard and nixtamalisation), as well as rye bread and soybeans. The misos were produced at Noma, a restaurant in Copenhagen, Denmark. Samples were analysed with biological and technical triplicates at the beginning and end of fermentation. We also incorporated in this study six samples of novel misos produced following the same recipe at Inua, a former affiliate restaurant of Noma in Tokyo, Japan. To analyse microbial community structure and diversity, metabarcoding (16S and ITS) and shotgun metagenomic analyses were performed. The misos contain a greater range of microbes than is currently described for miso in the literature. The composition of the novel yellow pea misos was notably similar to the traditional soybean ones, suggesting they are a good alternative, which supports our culinary collaborators sensory conclusions. For bacteria, we found that overall substrate had the strongest effect, followed by time, treatment (nixtamalisation), and geography. For fungi, there was a slightly stronger effect of geography and a mild effect of substrate, and no significant effects for treatment or time. Based on an analysis of metagenome-assembled genomes (MAGs), strains of S. epidermidis differentiated according to substrate. Carotenoid biosynthesis genes in these MAGs appeared in strains from Japan but not from Denmark, suggesting a possible gene-level geographical effect. The benign and possibly functional presence of S. epidermidis in these misos, a species typically associated with the human skin microbiome, suggests possible adaptation to the miso niche, and the flow of microbes between bodies and foods in certain fermentation as more common than is currently recognised. This study improves our understanding of miso ecology, highlights the potential for developing novel misos using diverse local ingredients, and suggests how fermentation innovation can contribute to studies of microbial ecology and evolution.

microbiology↗

Drosophila axis extension is robust to an orthogonal pull by invaginating mesoderm

As tissues grow and change shape during animal development, they physically pull and push on each other and these mechanical interactions can be important for morphogenesis. During Drosophila gastrulation, mesoderm invagination temporally overlaps with the extension of the ectodermal germband; the latter is caused primarily by Myosin II-driven polarised cell intercalation. Here we investigate the impact of mesoderm invagination on ectoderm extension, examining possible mechanical and mechanotransductive effects on Myosin II recruitment and polarised cell intercalation. We find that the germband ectoderm is deformed by the mesoderm pulling in the orthogonal direction, showing mechanical coupling between these tissues. However, we do not find a significant change in Myosin II planar polarisation in response to mesoderm invagination, nor an effect on the rate of junction shrinkage leading to cell intercalation events. We find some impact on the orientation of neighbour exchange events, and an increased rate of growth of new cell junctions, but this makes little difference to the rate of cell intercalation. We conclude that the cellular mechanisms of axis extension are robust to the mechanical pull of mesoderm invagination.

developmental biology↗

Evolutionarily diverse origins of honey bee deformed wing viruses

Novel transmission routes can allow infectious diseases to spread, often with devastating consequences. Ectoparasitic varroa mites vector a diversity of RNA viruses and, having switched hosts from the eastern to western honey bees (Apis cerana to Apis mellifera). They provide an opportunity to explore how novel transmission routes shape disease epidemiology. As the principal driver of the spread of Deformed Wing Viruses (mainly DWV-A and DWV-B), varroa infestation has also driven global honey bee health declines. The more virulent DWV-B strain has been replacing the original DWV-A strain in many regions over the past two decades. Yet, how these viruses originated and spread remains poorly understood. Here we use a phylogeographic analysis based on whole genome data to reconstruct the origins and demography of DWV spread. We found that, rather than reemerging in western honey bees after varroa switched hosts, as suggested by previous work, DWV-A most likely originated in Asia and spread in the mid-20th century. It also showed a massive population size expansion following the varroa host switch. By contrast, DWV-B was most likely acquired more recently from a source outside Asia, and appears absent from eastern honey bees, the original varroa host. These results highlight the dynamic nature of viral adaptation, whereby a vectors host switch can give rise to competing and increasingly virulent disease pandemics. The evolutionary novelty and rapid global spread of these host-virus interactions, together with observed spillover into other species, illustrate how increasing globalisation poses urgent threats to biodiversity and food security.

evolutionary biology↗

Spatio-temporal summation of perimetric stimuli in healthy observers

Spatial summation of perimetric stimuli has been used to derive conclusions about the spatial extent of retinal-cortical convergence, mostly from the size of the critical area of summation (Riccos area, RA) and critical number of Retinal Ganglion Cells (RGCs). However, spatial summation is known to change dynamically with stimulus duration. Conversely, temporal summation and critical duration also vary with stimulus size. Such an important and often neglected spatio-temporal interaction has important implications for modelling perimetric sensitivity in healthy observers and for formulating hypotheses for changes measured in disease. In this work, we performed experiments on visually heathy observers confirming the interaction of stimulus size and duration in determining summation responses in photopic conditions. We then propose a simplified computational model that captures these aspects of perimetric sensitivity by modelling the total retinal input, the combined effect of stimulus size, duration and retinal cones-to-RGC ratio. We additionally show that, in the macula, the enlargement of RA with eccentricity might not correspond to a constant critical number of RGCs, as often reported, but to a constant critical total retinal input. We finally compare our results with previous literature and show possible implications for modelling disease, especially glaucoma.

neuroscience↗

Prime-pull immunization of mice with a BcfA-adjuvanted vaccine elicits mucosal immunity and prevents SARS CoV-2 infection and pathology

Vaccines against SARS-CoV-2 that induce mucosal immunity capable of preventing infection and disease remain urgently needed. We show that intramuscular priming of mice with an alum and BcfA-adjuvanted Spike subunit vaccine, followed by a BcfA-adjuvanted mucosal booster, generated Th17 polarized tissue resident CD4+ T cells, and mucosal and serum antibodies. The serum antibodies efficiently neutralized SARS-CoV-2 and its Delta variant, suggesting cross-protection against a recent variant of concern (VOC). Immunization with this heterologous vaccine prevented weight loss following challenge with mouse-adapted SARS-CoV-2 and reduced viral replication in the nose and lungs. Histopathology showed a strong leukocyte and polymorphonuclear (PMN) cell infiltrate without epithelial damage in mice immunized with BcfA-containing vaccines. In contrast, viral load was not reduced in the upper respiratory tract of IL-17 knockout mice immunized with the same formulation, suggesting that the Th17 polarized T cell responses are critical for protection. We show that vaccines adjuvanted with alum and BcfA, delivered through a heterologous prime-pull regimen, protect against SARS-CoV-2 infection without causing enhanced respiratory disease. SIGNIFICANCEThere remains a need for SARS CoV-2 booster vaccines that generate mucosal immunity and prevent transmission. We show that systemic priming followed by a mucosal booster with a BcfA-adjuvanted subunit vaccine generates neutralizing antibodies and Th17 polarized systemic and tissue-resident immune responses that provide sterilizing immunity against wildtype SARS CoV-2, and a variant of concern. Importantly, in contrast to alum alone, the addition of BcfA prevents respiratory pathology. These results suggest that a BcfA-adjuvanted mucosal booster may elicit mucosal immunity in individuals previously immunized systemically with approved vaccines. This foundational study in mice sets the stage for testing our vaccine regimen in larger animal models as a booster vaccine.

immunology↗

Different temporal requirements for the LRR transmembrane receptors Tartan and Toll-2 in the formation of contractile interfaces at compartmental boundaries

Compartmental boundaries physically separate groups of epithelial cells, a property fundamental for the organization of the body plan in both insects and vertebrates. In many examples, this physical separation has been shown to be the consequence of a regulated increase in contractility of the actomyosin cortex at boundary cell-cell interfaces, a property important in developmental morphogenesis beyond compartmental boundary formation. In this study, we took an unbiased screening approach to identify cell surface receptors required for actomyosin enrichment and polarisation at parasegmental boundaries (PSBs) in early Drosophila embryos, leading us to uncover different temporal requirements for two LRR receptors, Tartan and Toll-2. First, we find that Tartan is required during germband extension for actomyosin enrichment at PSBs, confirming an earlier report. Next, by following in real time the dynamics of loss of boundary straightness in tartan mutant embryos compared to wildtype and ftz mutant embryos, we show that Tartan is not required beyond germband extension. At this stage, actomyosin enrichment at PSBs becomes regulated by Wingless signalling. We find that Wingless signalling regulates Toll-2 expression and we show that Toll-2 is required for planar polarization of actomyosin after the completion of germ-band extension. Thus the formation of contractile interfaces at PSBs depends on a dynamic set of LRR receptors cues. Our study also suggests that the number of receptor cues is small and that the receptors are interchangeable.

developmental biology↗

The dynamic interaction of systemic inflammation and the hypothalamic-pituitary-adrenal (HPA) axis during and after major surgery

Major surgery and critical illness produce a potentially life threatening systemic inflammatory response. The hypothalamic-pituitary-adrenal (HPA) axis is one of the key physiological systems that counterbalances this systemic inflammation through changes in adrenocorticotrophic hormone (ACTH) and cortisol. These hormones normally exhibit highly correlated ultradian pulsatility with an amplitude modulated by circadian processes. However, these dynamics are disrupted by major surgery and critical illness. In this work, we characterise the inflammatory, ACTH and cortisol responses of patients undergoing cardiac surgery and show that the HPA axis response can be classified into one of three phenotypes: single-pulse, two-pulses and multiple-pulses dynamics. We develop a mathematical model of cortisol secretion and metabolism that predicts the physiological mechanisms responsible for these different phenotypes. We show that the effects of inflammatory mediators are important only in the single-pulse pattern in which normal pulsatility is lost - suggesting that this phenotype could be indicative of the greatest inflammatory response. Investigating whether and how these phenotypes are correlated with clinical outcomes will be critical to patient prognosis and designing interventions to improve recovery.

physiology↗