Biology subjects

Escobedo, A.

Publications and source records attributed to Escobedo, A..

6 recordsLinked to original sources

bioRxiv2026

A Preoptic Neuronal Population Regulates Energy Expenditure and Balance

Maintaining energy balance requires coordination between food intake and energy expenditure, yet the neural pathways that regulate energy expenditure remain unclear. This study identifies kappa opioid receptor-expressing neurons in the preoptic area of the hypothalamus as a key regulator of whole-body metabolism. Using mouse models combined with fiber photometry, chemogenetic activation and inhibition, and chronic disruption of synaptic output, the results show that activity of these neurons follows daily pattern, are suppressed during feeding, and their inhibition acutely increases energy expenditure, body temperature, and activity levels. Long-term inhibition of this population produces sustained weight loss, selective reduction of white fat, preservation of lean mass and brown fat, and improved glucose tolerance even during high-fat feeding. These findings reveal a previously unrecognized circuit that links metabolic state with daily timing cues and suggest that targeting this neuronal population may offer new strategies for treating obesity and related metabolic disorders.

neuroscience↗

bioRxiv2024

Genetics, energetics and allostery during a billion years of hydrophobic protein core evolution

Protein folding is driven by the burial of hydrophobic amino acids in a tightly-packed core that excludes water. The genetics, biophysics and evolution of hydrophobic cores are not well understood, in part because of a lack of systematic experimental data on sequence combinations that do - and do not - constitute stable and functional cores. Here we randomize protein hydrophobic cores and evaluate their stability and function at scale. The data show that vast numbers of amino acid combinations can constitute stable protein cores but that these alternative cores frequently disrupt protein function because of allosteric effects. These strong allosteric effects are not due to complicated, highly epistatic fitness landscapes but rather, to the pervasive nature of allostery, with many individually small energy changes combining to disrupt function. Indeed both protein stability and ligand binding can be accurately predicted over very large evolutionary distances using additive energy models with a small contribution from pairwise energetic couplings. As a result, energy models trained on one protein can accurately predict core stability across hundreds of millions of years of protein evolution, with only rare energetic couplings that we experimentally identify limiting the transplantation of cores between highly diverged proteins. Our results reveal the simple energetic architecture of protein hydrophobic cores and suggest that allostery is a major constraint on sequence evolution.

biophysics↗

bioRxiv2022

Glutamatergic Supramammillary Nucleus Neurons Promote Active Coping to Stress

Threat-response neural circuits are conserved across species and play roles in normal behavior and psychiatric diseases. Maladaptive changes in these neural circuits contribute to stress, mood, and anxiety disorders. Active coping in response to stressors is a psychosocial factor associated with resilience against stress-induced mood and anxiety disorders. The neural circuitry underlying active coping is poorly understood, but the functioning of these circuits could be key for overcoming anxiety and related disorders. The supramammillary nucleus (SuM) has been suggested to be engaged by threat. SuM has many projections and contains a poorly understood diversity of populations. We identified a unique population of glutamatergic SuM neurons (SuMVGLUT2+::POA) based on projection to the preoptic area of the hypothalamus (POA) and found SuMVGLUT2+::POA neurons have extensive arborizations. SuMVGLUT2+::POA neurons project to brain areas that mediate various features of the stress and threat responses including the paraventricular nucleus thalamus (PVT), periaqueductal gray (PAG), and the habenula (Hb). Thus, SuMVGLUT2+::POA neurons are positioned as a hub, connecting to areas implicated in regulating stress responses. Here we report SuMVGLUT2+::POA neurons are recruited by diverse threatening stressors, and recruitment of SuMVGLUT2+::POA neurons correlated with active coping behaviors. We found that selective photoactivation of the SuMVGLUT2+::POA population drove aversion but not anxiety like behaviors. Activation of SuMVGLUT2+::POA neurons in the absence of acute stressors evoked active coping like behaviors and drove instrumental behavior (selective port activations) (Figure 6). Also, activation of SuMVGLUT2+::POA neurons was sufficient to convert passive coping strategies to active behaviors during acute stress. In contrast, we found activation of GABAergic (VGAT+) SuM neurons (SuMVGAT+) neurons did not alter drive aversion or active coping, but termination of photostimulation was followed by increased mobility in the forced swim test. These findings establish a new node in stress response circuitry that has projections to many brain areas, evokes flexible active coping behaviors, and offers new opportunities for furthering our neurobiological understanding of stress. O_FIG O_LINKSMALLFIG WIDTH=134 HEIGHT=200 SRC="FIGDIR/small/507167v4_fig6.gif" ALT="Figure 6"> View larger version (30K): org.highwire.dtl.DTLVardef@717f84org.highwire.dtl.DTLVardef@16ad323org.highwire.dtl.DTLVardef@4ba5b6org.highwire.dtl.DTLVardef@6c811e_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOFigure 6.C_FLOATNO SuMVGLUT2+::POA neurons can drive instrumental action-outcome operant behavior (A) Schematic of injection and implant in VGLUT2+ Cre mice and paradigm of testing in 10-minute trials with four days before a progressive ratio (PR) trial on day five. (B) Illustration of the testing paradigm and set up. 10 Hz photostimulation was applied during the trials. Activation of the active port triggered the house light and paused stimulation for 10 seconds. Also shown is the progressive ratio used with number of required port activations per reward on vertical axis and reward number on the horizontal. (C) Cre+ mice (n=11) activated the active port triggering significantly (****p<0.0001) more pauses in stimulation than Cre- mice (n=11) mice on all four days of testing. (D) Cre+ mice activated the port significantly (****p<0.0001, ***p<0.001) more than the Cre- mice on all four trials. (E) The time to first activation of the active port was significantly (*p=0.046) different during the first trial, and Cre+ mice activated the active port significantly (**p<0.01, **p<0.01, **p=0.034) faster on subsequent trials. (F) On the fifth day after four 10-minute trials, mice were tested for 30 minutes using a progressive ratio. Cre+ performed significantly (****p<0.001) more active port activations than Cre- mice and activated the inactive port significantly more (**p=0.001) times. Cre+ mice also triggered significantly (****p<0.001) more pauses in photostimulation than Cre- mice. (G) Individual data for a representative (n=7) cohort of Cre+ mice showing cumulative active port activations as a function of time during the progressive ratio test show on-going engagement of the active port throughout the 30-minute trial. (H) The cumulative pauses in photostimulation (rewards) earned as a function of time during the progressive ratio trial are shown for individual Cre+ mice. Mice earned between 7 and 11 pause rewards during the trial. All data plotted as means {+/-}SEM. C_FIG

neuroscience↗

bioRxiv2022

Androgen receptor condensates as drug targets

Transcription factors are among the most attractive therapeutic targets but are considered largely undruggable due to the intrinsically disordered nature of their activation domains. Here we show that the aromatic character of the activation domain of the androgen receptor, a therapeutic target for castration resistant prostate cancer, is key for its activity as a transcription factor by allowing it to partition into transcriptional condensates. Based on this knowledge we optimized the structure of a small molecule inhibitor, previously identified by phenotypic screening, that targets a specific transactivation unit within the domain that is partially folded and rich in aromatic residues. The optimized compounds had more affinity for their target, inhibited androgen receptor-dependent transcriptional programs, and had antitumorigenic effect in models of castration-resistant prostate cancer in cells and in vivo. These results establish a generalizable framework to target small molecules to the activation domains of oncogenic transcription factors and other disease-associated proteins with therapeutic intent.

biochemistry↗

bioRxiv2022

A glutamine-based single α-helix scaffold to target globular proteins

The binding of intrinsically disordered proteins to globular ones often requires the folding of motifs into [a]-helices. These interactions offer opportunities for therapeutic intervention but their modulation with small molecules is challenging because they bury large surfaces. Linear peptides that display the residues that are key for binding can be targeted to globular proteins when they form stable helices, which in most cases requires their chemical modification. Here we present rules to design peptides that fold into single [a]-helices by instead concatenating glutamine side chain to main chain hydrogen bonds recently discovered in polyglutamine helices. The resulting peptides are uncharged, contain only natural amino acids, and their sequences can be optimized to interact with specific targets. Our results provide design rules to obtain single [a]-helices for a wide range of applications in protein engineering and drug design.

biophysics↗

bioRxiv2018

Side chain to main chain hydrogen bonds stabilize polyglutamine helices in transcription factors

Polyglutamine (polyQ) tracts are regions of low sequence complexity of variable length found in more than one hundred human proteins. These tracts are frequent in activation domains of transcription factors and their length often correlates with transcriptional activity. In addition, in nine proteins, tract elongation beyond specific thresholds causes polyQ disorders. To study the structural basis of the association between tract length, transcriptional activity and disease, here we addressed how the conformation of the polyQ tract of the androgen receptor (AR), a transcription factor associated with the polyQ disease spinobulbar muscular atrophy (SBMA), depends on its length. We found that the tract folds into a helical structure stabilized by unconventional hydrogen bonds between glutamine side chains and main chain carbonyl groups. These bonds are bifurcate with the conventional main chain to main chain hydrogen bonds stabilizing -helices. In addition, since tract elongation provides additional interactions, the helicity of the polyQ tract directly correlates with its length. These findings suggest a plausible rationale for the association between polyQ tract length and AR transcriptional activity and have implications for establishing the mechanistic basis of SBMA.

biophysics↗