Search bioRxiv⌕ Search

Biology subjects

Epps, C. W.

Publications and source records attributed to Epps, C. W..

2 recordsLinked to original sources

Resolving the evolutionary history of bighorn sheep to inform future management

Although translocations can be effective for augmenting and restoring wild populations, they can disrupt native patterns of genetic structure, diversity, and local adaptation, thereby hampering conservation efforts. Managers must weigh potential costs and benefits of choosing well-differentiated donor individuals that could confer a boost to genetic diversity while avoiding outbreeding depression or ecological mismatch. This decision is more daunting when taxonomy is unclear or debated. For example, bighorn sheep (Ovis canadensis) populations in the United States that have been managed as the "California" lineage (part of the formerly recognized subspecies O. c. californiana) originate from serial translocations sourced from populations in British Columbia, resulting in reduced genetic diversity and elevated risk of inbreeding. After research on skull shape and RFLP analysis of mtDNA failed to find support for that subspecies, some jurisdictions treated the California lineage as part of the Rocky Mountain subspecies (O. c. canadensis) and mixed individuals in subsequent translocations, in part to increase genetic diversity of bottlenecked populations. Yet detailed genetic data addressing validity of those putative lineages were lacking. We reconstructed the genetic history of bighorn sheep by sampling the major putative subspecies or lineages, focusing on native (remnant) genetic variation, and generating high-throughput DNA sequencing data ([~]15,000-25,000 SNPs). Complementary phylogenetic and population genetic analyses supported the distinctiveness of four bighorn lineages at levels corresponding to subspecies. Our results confirm the genetic identity of the no longer putative California bighorn lineage, answering a question that puzzled geneticists and managers for decades. Moving forward, we recommend that managers 1) maintain the natural variation held in native populations by protecting them from intentional translocations or unintentional mixing with nearby populations; 2) prioritize withinlineage translocations for population augmentation or repatriation to previously occupied regions; and 3) cautiously consider any translocations that would lead to mixing of distinct evolutionary lineages.

evolutionary biology↗

Emigration Effects on Estimates of Age- and Sex-specific Survival of Small Mammals

O_LIAge- and sex-specific survival estimates are crucial to understanding important life-history characteristics and variation in these estimates can be a key driver of population dynamics. When estimating survival using Cormack-Jolly-Seber (CJS) models and capture-recapture data, emigration is typically assumed to have a negligible effect on estimates such that apparent survival is indistinguishable from true survival. Consequently, especially for populations or age classes with high dispersal rates, apparent survival estimates are often biased low and temporal patterns in survival might be masked when site fidelity varies temporally. C_LIO_LIWe used 9 years of annual mark-recapture data to estimate age-, sex-, and time-specific apparent survival of Humboldts flying squirrels (Glaucomys oregonensis) and Townsends chipmunks (Neotamias townsendii). For Humboldts flying squirrels, these estimates support a small body of research investigating potential variation of survival among age and sex classes, but age- and sex-specific survival has not been evaluated for Townsends chipmunks. We also quantified the effects of age- and sex-specific emigration on confounded estimates of apparent survival. C_LIO_LIOur estimates of juvenile flying squirrel survival were high relative to other small mammal species and estimates for both species were variable among years. We found survival differed moderately among age and sex classes for Humboldts flying squirrels, but little among age and sex classes for Townsends chipmunks, and that the degree to which emigration confounded apparent survival estimates varied substantially among years. Without correcting for emigration, apparent survival estimates were lower and temporal variation was obscured, particularly for male Humboldts flying squirrels and female Townsends chipmunks. C_LIO_LIOur results demonstrate that emigration can influence commonly used estimates of apparent survival. Unadjusted estimates confounded the interpretation of differences in survival between age and sex classes and masked potential temporal patterns in survival because the magnitude of adjustment varied among years. We conclude that apparent survival estimators are robust during some time periods; however, when emigration rates vary in time the effects of emigration should be carefully considered and accounted for, especially in comparative studies and those with policy and conservation implications. C_LI

ecology↗