Biology subjects

Engemann, D.-A.

Publications and source records attributed to Engemann, D.-A..

6 recordsLinked to original sources

bioRxiv2023

Do try this at home: Age prediction from sleep and meditation with large-scale low-cost mobile EEG

EEG is an established method for quantifying large-scale neuronal dynamics which enables diverse real-world biomedical applications including brain-computer interfaces, epilepsy monitoring and sleep staging. Advances in sensor technology have freed EEG from traditional laboratory settings, making low-cost ambulatory or at-home assessments of brain function possible. While ecologically valid brain assessments are becoming more practical, the impact of their reduced spatial resolution and susceptibility to noise remain to be investigated. This study set out to explore the potential of at-home EEG assessments for biomarker discovery using the brain age framework and four-channel consumer EEG data. We analyzed recordings from more than 5200 human subjects (18-81 years) during meditation and sleep, focusing on the age prediction task. With cross-validated R2 scores between 0.3 - 0.5, prediction performance was within the range of results obtained by recent benchmarks focused on laboratory-grade EEG. While age prediction was successful from both meditation and sleep recordings, the latter led to higher performance. Analysis by sleep stage uncovered that N2-N3 stages contained most of the signal. When combined, EEG features extracted from all sleep stages gave the best performance, suggesting that the entire night of sleep contains valuable age-related information. Furthermore, model comparisons suggested that information was spread out across electrodes and frequencies, supporting the use of multivariate modeling approaches. Thanks to our unique dataset of longitudinal repeat sessions spanning 153 to 529 days from eight subjects, we finally evaluated the variability of EEG-based age predictions, showing that they reflect both trait- and state-like information. Overall, our results demonstrate that state-of-the-art machine learning approaches based on age prediction can be readily applied to real-world EEG recordings obtained during at-home sleep and meditation practice.

neuroscience↗

bioRxiv2019

Combined behavioral and electrophysiological evidence for a direct cortical effect of prefrontal tDCS on disorders of consciousness

Severe brain injuries can lead to long-lasting disorders of consciousness (DoC) such as vegetative state/unresponsive wakefulness syndrome (VS/UWS) or minimally conscious state (MCS). While behavioral assessment remains the gold standard to determine conscious state, EEG has proven to be a promising complementary tool to monitor the effect of new therapeutics. Encouraging results have been obtained with invasive electrical stimulation of the brain, and recent studies identified transcranial direct current stimulation (tDCS) as an effective approach in randomized controlled trials. This non-invasive and inexpensive tool may turn out to be the preferred treatment option. However, its mechanisms of action and physiological effects on brain activity remain unclear and debated. Here, we stimulated 60 DoC patients with the anode placed over left-dorsolateral prefrontal cortex in a prospective open-label study. Clinical behavioral assessment improved in twelve patients (20%) and none deteriorated. This behavioral response after tDCS coincided with an enhancement of putative EEG markers of consciousness: in comparison with non-responders, responders showed increases of power and long-range cortico-cortical functional connectivity in the theta-alpha band, and a larger and more sustained P300 suggesting improved conscious access to auditory novelty. The EEG changes correlated with electric fields strengths in prefrontal cortices, and no correlation was found on the scalp. Taken together, this prospective intervention in a large cohort of DoC patients strengthens the validity of the proposed EEG signatures of consciousness, and is suggestive of a direct causal effect of tDCS on consciousness.

neuroscience↗

bioRxiv2019

Emergence of β and γ networks following multisensory training

Our perceptual reality relies on inferences about the causal structure of the world given by multiple sensory inputs. In ecological settings, multisensory events that cohere in time and space benefit inferential processes: hearing and seeing a speaker enhances speech comprehension, and the acoustic changes of flapping wings naturally pace the motion of a flock of birds. Here, we asked how a few minutes of (multi)sensory training could shape cortical interactions in a subsequent perceptual task, and investigated oscillatory activity and functional connectivity as a function of sensory history in training. Human participants performed a visual motion coherence discrimination task while being recorded with magnetoencephalography (MEG). Three groups of participants performed the same task with visual stimuli only, while listening to acoustic textures temporally comodulated with the strength of visual motion coherence, or with auditory noise uncorrelated with visual motion. The functional connectivity patterns before and after training were contrasted to resting-state networks to assess the variability of common task-relevant networks, and the emergence of new functional inter-actions following training. One main finding is the emergence of a large-scale synchronization in the high{gamma} (gamma: 60-120Hz) and {beta} (beta:15-30Hz) bands for individuals who underwent comodulated multisensory training. The post-training network involved prefrontal, parietal, and visual cortices. Our results suggest that the integration of evidence and decision-making strategies become more efficient following congruent multisensory training through plasticity in network routing and oscillatory regimes.

neuroscience↗

bioRxiv2019

Semantic coding in the occipital cortex of early blind individuals

The visual cortex of early blind individuals is reorganized to support cognitive functions distinct from vision. Research suggests that one such prominent function is language. However, it is unknown whether the visual cortex of blind individuals codes for word meaning. We addressed this question by comparing neuronal activity evoked by a semantic decision task, using magnetoencephalography (MEG), between 12 early blind and 14 sighted participants otherwise comparable with regard to gender, age and education. We found that average brain responses to thousands of auditory word stimuli followed similar time courses in blind and sighted participants. However, in blind participants only, we found a sustained enhancement of activity in the visual cortex. Moreover, across the whole brain, we found an effect of semantic category from about 400 ms after word onset. Strikingly, in blind participants, semantic categories were discriminable starting 580 ms after word onset from signal captured by sensors sensitive to the visual cortex. We replicated the analyses in time windows locked to stimulus onset and behavioral response, using both classical hypothesis testing and machine learning for single-trial classification. Semantic decisions were well classified in all participants (AUC [~] 0.60), but generalization capacity across participants was found reduced in the blind group due to a larger variability of discriminative patterns. In conclusion, our findings suggest that brain plasticity reorganizes the semantic system of blind individuals, and extends semantic computation into the visual cortex.

neuroscience↗

bioRxiv2018

Prediction and inference diverge in biomedicine:Simulations and real-world data

In the 20th century many advances in biological knowledge and evidence-based medicine were supported by p-values and accompanying methods. In the beginning 21st century, ambitions towards precision medicine put a premium on detailed predictions for single individuals. The shift causes tension between traditional methods used to infer statistically significant group differences and burgeoning machine-learning tools suited to forecast an individuals future. This comparison applies the linear model for identifying significant contributing variables and for finding the most predictive variable sets. In systematic data simulations and common medical datasets, we explored how statistical inference and pattern recognition can agree and diverge. Across analysis scenarios, even small predictive performances typically coincided with finding underlying significant statistical relationships. However, even statistically strong findings with very low p-values shed little light on their value for achieving accurate prediction in the same dataset. More complete understanding of different ways to define important associations is a prerequisite for reproducible research findings that can serve to personalize clinical care.

bioinformatics↗

bioRxiv2017

MEG/EEG group study with MNE: recommendations, quality assessments and best practices

Cognitive neuroscience questions are commonly tested with experiments that involve a cohort of subjects. The cohort can consist of a handful of subjects for small studies to hundreds or thousands of subjects in open datasets.\n\nWhile there exist various online resources to get started with the analysis of magnetoencephalography (MEG) or electroencephalography (EEG) data, such educational materials are usually restricted to the analysis of a single subject. This is in part because data from larger group studies are harder to share, but also analyses of such data are often require subject-specific decisions which are hard to document.\n\nThis work presents the results obtained by the reanalysis of an open dataset from Wakeman and Henson (2015) using the MNE software package. The analysis covers preprocessing steps, quality assurance steps, sensor space analysis of evoked responses, source localization, and statistics in both sensor and source space. Results with possible alternative strategies are presented and discussed at different stages such as the use of high-pass filtering versus baseline correction, tSSS versus SSS, the use of a minimum norm inverse versus LCMV beamformer, and the use of univariate or multivariate statistics. This aims to provide a comparative study of different stages of M/EEG analysis pipeline on the same dataset, with open access to all of the scripts necessary to reproduce this analysis.

neuroscience↗