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Biology subjects

Emken, E.

Publications and source records attributed to Emken, E..

2 recordsLinked to original sources

Fabry-Perot Microscopy for Improved Contrast Enhancement and 3D Cellular Imaging

Fabry-Perot Microscopy (FPM) integrates a lab-on-a-chip optical cavity and tunable light source in a label-free imaging technique that enhances contrast and enables pseudo-three-dimensional imaging in transparent biological samples. By integrating a fixed-length Fabry-Perot cavity into a coated microfluidic cell, FPM selectively highlights structures of defined optical thickness through resonance-based interference. We demonstrate that this architecture preserves lateral resolution while providing up to 20-fold contrast enhancement compared to conventional wide-field microscopy. Using human epithelial cells, blood components, and E. coli bacteria, we show that FPM enables clear visualization of subcellular features and discrimination of cell types. Spectrally resolved image stacks are used to extract pixel-wise optical thickness maps, from which physical thickness and refractive index can be derived. These parameters reveal nanoscale structural differences and offer routes to biophysical characterization. Notably, the system operates without mechanical scanning the cavity, using spectral tuning alone to generate images. FPM is compatible with standard microscope optics, and functions under static or flow-compatible conditions, making it suitable for high-throughput cytometry and in vitro diagnostics. These results establish FPM as a versatile extension to wide-field microscopy, enabling contrast-tunable, quantitative imaging of biomedical specimen.

biophysics↗

High-throughput Mucus Microrheology for Phenotyping and Disease Modeling

Mucus mechanics regulate barrier, clearance, and transport functions across epithelial tissues, yet quantitative rheology remains difficult to scale because available assays require large volumes, specialized equipment, or extensive manual analysis. Here, a high-throughput microrheology workflow based on Differential Dynamic Microscopy is established for frequency-dependent measurements from 3-10 uL mucus samples and intact mucosal surfaces using standard epifluorescence microscopy. The workflow combines preloaded tracer chambers, controlled sample handling, short video acquisition, and automated analysis to reduce operator intervention while preserving sensitivity to mucus relaxation on 1--20 s time scales. Validation against shear rheometry and particle tracking in reconstituted mucin gels shows robust recovery of viscoelastic trends across mucus-like material states. Applications in human airway epithelial air--liquid interface cultures resolve culture-medium, age, donor, COPD, cigarette-smoke, cystic-fibrosis treatment, and IL-13-associated differences, including spatial heterogeneity in situ. Measurements of clinical cervical mucus further demonstrate parallel testing of scarce specimens and sensitivity to osmotic swelling. This platform provides a scalable route to quantitative mucus phenotyping for disease modeling, therapeutic testing, and future precision-medicine studies.

bioengineering↗