Biology subjects

Egeter, B.

Publications and source records attributed to Egeter, B..

3 recordsLinked to original sources

bioRxiv2024

Extending sampling approaches for great crested newt (Triturus cristatus) eDNA monitoring

O_LIEnvironmental DNA (eDNA) monitoring has been used for great crested newt (Triturus cristatus) survey in the UK since the publication of a Defra-funded trial in 2014. If eDNA results are to be used in support of a great crested newt licence, surveys must be performed during a 76-day survey window (15 April - 30 June) to coincide with peak great crested newt activity, and must follow the approved ethanol precipitation protocol. However, eDNA detection is possible in other months and filtration may be a more effective method of eDNA capture. C_LIO_LIWe investigated whether the great crested newt eDNA survey season could be extended and filtration could be used for great crested newt eDNA capture by reviewing the available evidence and conducting a field study from April to October 2022. Paired water samples for ethanol precipitation and filtration were collected from 25 ponds once a month, resulting in 124 samples of each type. All samples (N = 248) were analysed with the approved great crested newt quantitative PCR assay. C_LIO_LIOur results indicate that great crested newts can be reliably detected using both eDNA capture methods from April to August, with detection rates decreasing in September and October. Great crested newt eDNA detection was comparable or higher with filtration than ethanol precipitation. C_LIO_LIPractical implication. Acceptance of filtration for great crested newt eDNA surveys could allow more water to be processed for robust and reliable estimates of great crested newt presence. Extending the great crested newt eDNA survey season to August could allow more waterbodies to be surveyed for great crested newt presence (but not absence), and identification of sites that provide important habitat for great crested newts outside of the breeding season. This would also remove logistical challenges and costs associated with completing sampling within 11 weeks and laboratory analysis within 10 working days from sample receipt. Furthermore, great crested newt eDNA surveys could be more frequently carried out alongside monitoring for other species, which are typically surveyed from April to September/October or year-round with conventional methods or eDNA surveys using filtration. This could enable infrastructure projects to develop more effective mitigation measures as well as reduce time required from surveyors and survey costs. C_LI

ecology↗

bioRxiv2023

Short Term Impact of Recycling-Derived Fertilizers on Their P Supply for Perennial Ryegrass (Lolium perenne)

Phosphorus is a finite, essential macronutrient for agriculture. Various nutrient recycling technologies in waste streams management are currently under development in many European countries in order to alleviate the dependency of the EU on imports of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products such as struvites and ashes need to be assessed for their application as so-called recycling-derived fertilisers (RDF) in the agricultural sector prior to commercialisation. Albeit high phosphorus abundance in most soils, the phosphorus availability for plant growth promotion in the soil solution is usually low due to strong P sorption in soil and depends vastly on the microbial mobilisation capability of the soil. To investigate the impact of different phosphorus fertilizers on plant growth and the soil P cycling microbiota, a short-term pot trial was conducted over the period of 54 days. Lolium perenne (var. AberGreen) was grown with application of superphosphate (SP) as inorganic fertiliser, two ashes (poultry litter ash (PLA) and sewage sludge ash (SSA) and two struvites (municipal wastewater struvite (MWS) and commercial CrystalGreen(R) (CGS) in rates of 20 and 60 kg P ha-1 in four replicates. A P-free control (SP0) was also included in the trial. Post-harvest, a positive correlation between dry weight yield and struvite application was detected, struvite P also was higher readily available and ACP activity was significantly improved for struvites at the high P application rate. The ash RDFs showed a liming effect at 60 kg P ha-1, and PLA60 negatively affected ACP activity, while PLA20 had significantly lower phoD copy numbers. P mobilization from phosphonates and phytates was not affected, TCP solubilization was negatively affected by mineral SP fertilizer application at both P concentrations. Overall, the bacterial and phoD harbouring community were not strongly affected by the P fertilization in this study.

microbiology↗

bioRxiv2020

Speeding up the detection of invasive aquatic species using environmental DNA and nanopore sequencing

Traditional detection of aquatic invasive species, via morphological identification is often time-consuming and can require a high level of taxonomic expertise, leading to delayed mitigation responses. Environmental DNA (eDNA) detection approaches of multiple species using Illumina-based sequencing technology have been used to overcome these hindrances, but sample processing is often lengthy. More recently, portable nanopore sequencing technology has become available, which has the potential to make molecular detection of invasive species more widely accessible and to substantially decrease sample turnaround times. However, nanopore-sequenced reads have a much higher error rate than those produced by Illumina platforms, which has so far hindered the adoption of this technology. We provide a detailed laboratory protocol and bioinformatic tools to increase the reliability of nanopore sequencing to detect invasive species, and we test its application using invasive bivalves. We sampled water from sites with pre-existing bivalve occurrence and abundance data, and contrasting bivalve communities, in Italy and Portugal. We extracted, amplified and sequenced eDNA with a turnaround of 3.5 days. The majority of processed reads were [≥] 99 % identical to reference sequences. There were no taxa detected other than those known to occur. The lack of detections of some species at some sites could be explained by their known low abundances. This is the first reported use of MinION to detect aquatic invasive species from eDNA samples. The approach can be easily adapted for other metabarcoding applications, such as biodiversity assessment, ecosystem health assessment and diet studies.

ecology↗