Biology subjects

Dyer, A.

Publications and source records attributed to Dyer, A..

6 recordsLinked to original sources

bioRxiv2025

MacroMove: a global database of animal movement across taxa and movement types

Animal movement is a key ecological process that shapes species distributions and interactions and connects resources, populations and habitats, underpinning ecosystem functioning and stability. While foraging, dispersal, and migration are the most widely studied movement types, they operate at distinct spatial and temporal scales, and no single resource currently integrates these processes across taxa, traits, and ecosystems. We present MacroMove, a comprehensive global movement database containing 92,207 observations from 4,329 (4,167 using GBIF backbone) species, spanning 36 classes and 648 families across 205 countries, with data sourced from 6,234 references and 36 meta-analyses/databases. It includes both vertebrates and invertebrates from terrestrial, freshwater, and marine environments. The database includes various movement metrics - home range area, dispersal distance, migration distance, day range, routine speed and maximum speed - including summary statistics (e.g. mean, median, maximum) where available. Records are reported at individual, population, or species levels and include standardised metadata describing species identity (binomial name, class, family), research methods (e.g. sampling method, sampling level and sampling dates) and location (e.g. country, location and coordinates). The dataset was assembled from published meta-analyses/databases and original studies included in these meta-analyses. Trait information (body mass and locomotion mode) from original studies and associated metadata was incorporated, with additional data sourced from established trait databases and reputable online resources. In the final dataset, body mass is available for 98 % and locomotion for 100% of species. Taxonomy was harmonised using the Global Biodiversity Information Facility (GBIF) backbone taxonomy. The database is supplied in comma-delimited text (.csv) format to maximise accessibility and compatibility with a wide range of workflows. By consolidating existing movement data into a single, standardised and openly accessible resource, MacroMove fills a major gap in available biodiversity data. It serves as a practical and extensible foundation for synthesising movement information across taxa and ecosystems, advancing data-driven research on the ecological and evolutionary correlates of animal movement.

ecology↗

bioRxiv2024

Transdiagnostic Symptom Domains are Associated with Head Motion During Multimodal Imaging in Children

BackgroundHead motion is a challenge for neuroimaging research in developmental populations. However, it is unclear how transdiagnostic symptom domains including attention, disruptive behavior (e.g., externalizing behavior), and internalizing problems are linked to scanner motion in children, particularly across structural and functional MRI. The current study examined whether transdiagnostic domains of attention, disruptive behavior, and internalizing symptoms are associated with scanner motion in children during multimodal imaging. MethodsIn a sample of 9,045 children aged 9-10 years in the Adolescent Brain Cognitive Development (ABCD) Study, logistic regression and linear mixed-effects models were used to examine associations between motion and behavior. Motion was indexed using ABCD Study quality control metrics and mean framewise displacement for the following: T1-weighted structural, resting-state fMRI, diffusion MRI, Stop-Signal Task, Monetary Incentive Delay task, and Emotional n-Back task. The Child Behavior Checklist was used as a continuous measure of symptom severity. ResultsGreater attention and disruptive behavior problem severity was associated with a lower likelihood of passing motion quality control across several imaging modalities. In contrast, increased internalizing severity was associated with a higher likelihood of passing motion quality control. Increased attention and disruptive behavior problem severity was also associated with increased mean motion, whereas increased internalizing problem severity was associated with decreased mean motion. ConclusionTransdiagnostic domains emerged as predictors of motion in youths. These findings have implications for advancing development of generalizable and robust brain-based biomarkers, computational approaches for mitigating motion effects, and enhancing accessibility of imaging protocols for children with varying symptom severities.

neuroscience↗

bioRxiv2022

Heat dissipation drives the hump-shaped scaling of animal dispersal speed with body mass

Dispersal is critical to animal survival and thus biodiversity in fragmented landscapes. Increasing fragmentation in the Anthropocene necessitates predictions about the dispersal capabilities of the many species that inhabit natural ecosystems. This requires mechanistic, trait-based models of animal dispersal which are sufficiently general as well as biologically realistic. While larger animals should generally be able to travel greater distances, reported trends in their speeds across a range of body sizes suggest limited locomotor capacities among the largest species. Here, we show that this also applies to dispersal speeds and that this arises because of their limited heat-dissipation capacities. We derive a model considering how fundamental biophysical constraints of animal body mass associated with energy utilisation (i.e. larger animals have a lower metabolic energy cost of locomotion) and heat-dissipation (i.e. larger animals require more time to dissipate metabolic heat) limit sustained (i.e. aerobic) dispersal speeds. Using an extensive empirical dataset of animal dispersal speeds (531 species), we show that this allometric heat-dissipation model best captures the hump-shaped trends in dispersal speed with body mass for flying, running and swimming animals. This implies that the inability to dissipate metabolic heat leads to the saturation and eventual decrease in dispersal speed with increasing body mass as larger animals must reduce their realised dispersal speeds in order to avoid hyperthermia during extended dispersal bouts. As a result, the highest dispersal speeds are achieved by animals of intermediate body mass, whereas the largest species might suffer from stronger dispersal limitations in fragmented landscapes than previously anticipated. Consequently, we provide a mechanistic understanding of animal dispersal speed that can be generalised across species, even when the details of an individual species biology are unknown, to facilitate more realistic predictions of biodiversity dynamics in fragmented landscapes.

ecology↗

bioRxiv2022

The P681H mutation in the Spike glycoprotein escapes IFITM restriction and is necessary for type I interferon resistance in the SARS-CoV-2 alpha variant

The appearance of new dominant variants of concern (VOCs) of severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) threatens the global response to the COVID-19 pandemic. Of these, the alpha variant (also known as B.1.1.7) that appeared initially in the UK became the dominant variant in much of Europe and North America in the first half of 2021. The Spike (S) glycoprotein of alpha acquired seven mutations and two deletions compared to the ancestral virus, including the P681H mutation in the polybasic cleavage site that has been suggested to enhance S cleavage. Here, we show that the alpha S protein confers a level of resistance to the effects of interferon-{beta} (IFN{beta}) in human lung epithelial cells. This correlates with resistance to an entry restriction mediated by interferon-induced transmembrane protein 2 (IFITM2) and a pronounced infection enhancement by IFITM3. Furthermore, the P681H mutation is essential for resistance to IFN{beta} and context-dependent resistance to IFITMs in the alpha S. However, while this appears to confer changes in sensitivity to endosomal protease inhibition consistent with enhanced cell-surface entry, its reversion does not reduce cleaved S incorporation into particles, indicating a role downstream of furin cleavage. Overall, we suggest that, in addition to adaptive immune escape, mutations associated with VOCs may well also confer replication and/or transmission advantage through adaptation to resist innate immune mechanisms. IMPORTANCEThe emergence of Variants of Concern of SARS-CoV-2 has been a key challenge in the global response to the COVID-19 pandemic. Accumulating evidence suggests VOCs are being selected to evade the human immune response, with much interest focussed on mutations in the Spike protein that escape from neutralizing antibody responses. However, resistance to the innate immune response is essential for efficient viral replication and transmission. Here we show that the alpha (B.1.1.7) VOC of SARS-CoV-2 is substantially more resistant to type-1 interferons than the parental Wuhan-like virus. This correlates with resistance to the antiviral protein IFITM2, and enhancement by its paralogue IFITM3, that block virus entry into target cells. The key determinant of this is a proline to histidine change at position 681 in S adjacent to the furin-cleavage site that we have shown previously modulates IFITM2 sensitivity. Unlike other VOCs, in the context of the alpha spike, P681H modulates cell entry pathways of SARS-CoV-2, further reducing its dependence one endosomal proteases. Reversion of position 681 to a proline in viruses bearing the alpha spike is sufficient to restore interferon and IFITM2 sensitivity without reducing furin-mediated spike cleavage, suggesting post cleavage conformational changes in S are changing the viral entry pathway and therefore sensitivity to interferon. These data highlight the dynamic nature of the SARS CoV-2 S as it adapts to both innate and adaptive immunity in the human population.

microbiology↗

bioRxiv2021

The P681H mutation in the Spike glycoprotein confers Type I interferon resistance in the SARS-CoV-2 alpha (B.1.1.7) variant

Variants of concern (VOCs) of severe acute respiratory syndrome coronavirus type-2 (SARS-CoV-2) threaten the global response to the COVID-19 pandemic. The alpha (B.1.1.7) variant appeared in the UK became dominant in Europe and North America in early 2021. The Spike glycoprotein of alpha has acquired a number mutations including the P681H mutation in the polybasic cleavage site that has been suggested to enhance Spike cleavage. Here, we show that the alpha Spike protein confers a level of resistance to the effects of interferon-{beta} (IFN{beta}) in lung epithelial cells. This correlates with resistance to restriction mediated by interferon-induced transmembrane protein-2 (IFITM2) and a pronounced infection enhancement by IFITM3. Furthermore, the P681H mutation is necessary for comparative resistance to IFN{beta} in a molecularly cloned SARS-CoV-2 encoding alpha Spike. Overall, we suggest that in addition to adaptive immune escape, mutations associated with VOCs also confer replication advantage through adaptation to resist innate immunity.

microbiology↗

bioRxiv2020

Auditory Countermeasures for Sleep Inertia: An Ecological Study Examining the Influence of Melody and Rhythm.

Sleep inertia is the potentially harmful decline in cognition that occurs upon and following awakening. Sound has been shown to counteract the negative symptoms of sleep inertia, with a recent study revealing that an alarm perceived as melodic by participants displayed a significant relationship to reports of reductions in perceived sleep inertia. This current research builds on these findings by specifically testing the effect melodic and rhythmic stimuli exhibit on sleep inertia for subjects awakening in their habitual environments. Two test Groups (A & B; N = 10 equally) completed an online psychomotor experiment and questionnaire in two separate test sessions immediately following awakening from nocturnal sleep epochs. Both groups responded to a Control stimulus in the first session, while in the second session, Group A experienced a Melodic treatment, and Group B the Rhythmic. The results show that the melodic treatment significantly decreased attentional Lapses, False Starts and had a significantly improved PVT Performance Score than the Control. There was no significant result for Reaction Time or Response Speed. Additionally, no significant difference was observed for all PVT metrics between the Control - Rhythmic conditions. The results support melodies potential to counteract symptoms of sleep inertia by the observed increase in participant vigilance following waking. Specifically, a melodically rhythmic contour is highlighted as a significant musical treatment noteworthy of consideration when designing alarm compositions for the reduction of sleep inertia. As auditory assisted awakening is a common within modern society, improvements in alarm sound design may have advantages in domestic and commercial settings.

physiology↗