Biology subjects

Dupre la Tour, T.

Publications and source records attributed to Dupre la Tour, T..

7 recordsLinked to original sources

bioRxiv2025

Individual differences shape conceptual representation in the brain

Each person experiences the world through a unique conceptual lens, shaped by personal experiences, natural variations, or disease. These individual differences have remained largely inaccessible to cognitive neuroscience and clinical neurology, limiting the development of precision medicine approaches to cognitive disorders. To overcome this limitation, here we develop a new statistical framework to measure and interpret individual differences in functional brain representations. We apply this framework to characterize how different individuals represent the same concepts. Twenty-four participants listened to narrative stories while their brain activity was measured with functional MRI (fMRI). Encoding models were used to recover how hundreds of concepts were represented in each persons brain. Despite listening to identical stories, participants showed systematic individual differences in conceptual representations. These differences reveal person-specific biases in how concepts are represented in the brain. Individual variability was highest in regions that represent social information. Because these regions are thought to integrate sensory information with personal beliefs and experiences, the observed individual differences may reflect cognitive traits unique to each person. Our work reveals that individual differences are a systematic, measurable principle of conceptual representations in the human brain. By enabling researchers to measure and interpret differences in person-specific functional brain representations, our work establishes a new paradigm for precision neuroscience. This paradigm provides a rigorous foundation for developing fMRI applications in precision medicine to diagnose and monitor cognitive disorders.

neuroscience↗

bioRxiv2024

A biologically-inspired hierarchical convolutional energy model predicts V4 responses to natural videos

V4 is a key area within the visual processing hierarchy, and it represents features of intermediate complexity. However, no current computational model explains V4 responses under natural conditions. To address this, we developed a new hierarchical convolutional energy (HCE) model reflecting computations thought to occur in areas V1, V2, and V4, but which consists entirely of simple- and complex-like units like those found in V1. In contrast to prior models, the HCE model is trained end-to-end on neurophysiology data, without relying on pre-trained network features. We recorded 313 V4 neurons during full-color nature video stimulation and fit the HCE model to each neuron. The models predicted optimal patterns (POPs) revealed complex spatiotemporal pattern selectivity in V4, supporting its role in representing space, time, and color. These findings indicate that area V4 is crucial for image segmentation and grouping operations that are essential for complex vision. Thus, responses of V4 neurons under naturalistic conditions can be explained by a hierarchical three-stage model where each stage consists entirely of units like those found in area V1.

neuroscience↗

bioRxiv2023

Model connectivity: leveraging the power of encoding models to overcome the limitations of functional connectivity

Functional connectivity (FC) is the most popular method for recovering functional networks of brain areas with fMRI. However, because FC is defined as temporal correlations in brain activity, FC networks are confounded by noise and lack a precise functional role. To overcome these limitations, we developed model connectivity (MC). MC is defined as similarities in encoding model weights, which quantify reliable functional activity in terms of interpretable stimulus- or task-related features. To compare FC and MC, both methods were applied to a naturalistic story listening dataset. FC recovered spatially broad networks that are confounded by noise, and that lack a clear role during natural language comprehension. By contrast, MC recovered spatially localized networks that are robust to noise, and that represent distinct categories of semantic concepts. Thus, MC is a powerful data-driven approach for recovering and interpreting the functional networks that support complex cognitive processes.

neuroscience↗

bioRxiv2023

The Cortical Representation of Language Timescales is Shared between Reading and Listening

Language comprehension involves integrating low-level sensory inputs into a hierarchy of increasingly high-level features. Prior work studied brain representations of different levels of the language hierarchy, but has not determined whether these brain representations are shared between written and spoken language. To address this issue, we analyzed fMRI BOLD data recorded while participants read and listened to the same narratives in each modality. Levels of the language hierarchy were operationalized as timescales, where each timescale refers to a set of spectral components of a language stimulus. Voxelwise encoding models were used to determine where different timescales are represented across the cerebral cortex, for each modality separately. These models reveal that between the two modalities timescale representations are organized similarly across the cortical surface. Our results suggest that, after low-level sensory processing, language integration proceeds similarly regardless of stimulus modality.

neuroscience↗

bioRxiv2022

Feature-space selection with banded ridge regression

Encoding models provide a powerful framework to identify the information represented in brain recordings. In this framework, a stimulus representation is expressed within a feature space and is used in a regularized linear regression to predict brain activity. To account for a potential complementarity of different feature spaces, a joint model is fit on multiple feature spaces simultaneously. To adapt regularization strength to each feature space, ridge regression is extended to banded ridge regression, which optimizes a different regularization hyperparameter per feature space. The present paper proposes a method to decompose over feature spaces the variance explained by a banded ridge regression model. It also describes how banded ridge regression performs a feature-space selection, effectively ignoring non-predictive and redundant feature spaces. This feature-space selection leads to better prediction accuracy and to better interpretability. Banded ridge regression is then mathematically linked to a number of other regression methods with similar feature-space selection mechanisms. Finally, several methods are proposed to address the computational challenge of fitting banded ridge regressions on large numbers of voxels and feature spaces. All implementations are released in an open-source Python package called Himalaya.

neuroscience↗

bioRxiv2017

Oscillatory multiplexing indexes precision

Oscillatory coupling has been implicated in the representation and in the processing of information in the brain. Specific hypotheses suggest that oscillatory coupling may be relevant for the temporal coding of information but to which extent this may translate to conscious timing is unknown. Here, we tested the hypothesis that the temporal precision of self-generated timed actions may be controlled by phase-amplitude coupling (PAC). Using a timing task, we show the existence of significant alpha-beta (-{beta}) PAC, robust at the individual level, and specific to temporal production. Second, an increase in the strength of -{beta} PAC was associated with a smaller variance in time production, i.e. an increased precision in timing, but there was no correlation with the duration of the produced interval. Our results suggest an active role for -{beta} coupling in maintaining the precision of the endogenous temporal goal during time production: specifically, oscillations may maintain the content of current cognitive states, thus securing the endogenous temporal code for duration estimation instantiated in {beta} band. Oscillatory multiplexing may thus index the variance of neuronal computations, which translates into the precision of behavioral performance.

neuroscience↗

bioRxiv2017

Non-linear Auto-Regressive Models for Cross-Frequency Coupling in Neural Time Series

We address the issue of reliably detecting and quantifying cross-frequency coupling (CFC) in neural time series. Based on non-linear auto-regressive models, the proposed method provides a generative and parametric model of the time-varying spectral content of the signals. As this method models the entire spectrum simultaneously, it avoids the pitfalls related to incorrect filtering or the use of the Hilbert transform on wide-band signals. As the model is probabilistic, it also provides a score of the model \"goodness of fit\" via the likelihood, enabling easy and legitimate model selection and parameter comparison; this data-driven feature is unique to our model-based approach. Using three datasets obtained with invasive neurophysiological recordings in humans and rodents, we demonstrate that these models are able to replicate previous results obtained with other metrics, but also reveal new insights such as the influence of the amplitude of the slow oscillation. Using simulations, we demonstrate that our parametric method can reveal neural couplings with shorter signals than non-parametric methods. We also show how the likelihood can be used to find optimal filtering parameters, suggesting new properties on the spectrum of the driving signal, but also to estimate the optimal delay between the coupled signals, enabling a directionality estimation in the coupling.\n\nAuthor SummaryNeural oscillations synchronize information across brain areas at various anatomical and temporal scales. Of particular relevance, slow fluctuations of brain activity have been shown to affect high frequency neural activity, by regulating the excitability level of neural populations. Such cross-frequency-coupling can take several forms. In the most frequently observed type, the power of high frequency activity is time-locked to a specific phase of slow frequency oscillations, yielding phase-amplitude-coupling (PAC). Even when readily observed in neural recordings, such non-linear coupling is particularly challenging to formally characterize. Typically, neuroscientists use band-pass filtering and Hilbert transforms with ad-hoc correlations. Here, we explicitly address current limitations and propose an alternative probabilistic signal modeling approach, for which statistical inference is fast and well-posed. To statistically model PAC, we propose to use non-linear auto-regressive models which estimate the spectral modulation of a signal conditionally to a driving signal. This conditional spectral analysis enables easy model selection and clear hypothesis-testing by using the likelihood of a given model. We demonstrate the advantage of the model-based approach on three datasets acquired in rats and in humans. We further provide novel neuroscientific insights on previously reported PAC phenomena, capturing two mechanisms in PAC: influence of amplitude and directionality estimation.

neuroscience↗