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Biology subjects

Duckworth, B.

Publications and source records attributed to Duckworth, B..

2 recordsLinked to original sources

ARAP2 regulates responses to interferon-gamma by restricting SOCS1

Interferon-gamma (IFN{gamma}) is critical for immunity against intra-macrophagic pathogens, signaling through the JAK-STAT pathway to induce a tyrosine-phosphorylation cascade that ensures a potent immune response. Excessive JAK-STAT signaling can drive hyperinflammation and autoimmunity, and thus signaling is tightly and selectively regulated by the IFN{gamma}-inducible protein, Suppressor of Cytokine Signaling 1 (SOCS1). SOCS1 inhibits signaling by directly blocking JAK kinase activity. Here we identified a SOCS1-interacting partner, ARAP2 that fine-tunes SOCS1 function. We report that tyrosine 415 in ARAP2 binds the SOCS1-Src Homology 2 (SH2) domain and limits the ability of SOCS1 to inhibit IFN{gamma} signaling. Our findings show that ARAP2 promotes the IFN{gamma} response through a phosphorylation dependent interaction with the negative regulator SOCS1.

cell biology↗

DAR1 - An Easy to Use, Single-Box, Configuration of a Global Scale Biogeochemical Ecosystem Model

Global scale biogeochemical ocean models, such as the MIT-Darwin model, are important tools to help us understand the mechanisms which drive elemental cycles and marine planktonic ecosystems. However, these models are difficult to use and their complex outputs can make them tricky to interpret. Here we present DAR1, an easy-to-use framework written in Julia that maintains all of the ecological and chemical complexity present in the MIT-Darwin model while removing the computational and physical complexity. We provide three studies to showcase DAR1 features: a framework for nutrient amendment bottle experiments; a test of steady state assumptions on plankton community structure at the global scale; and a test of theoretical predictions for the niche space of nitrogen-fixing plankton. DAR1 is ideal for model based testing of ecological predictions from field and experimental observations while also providing access to modeling tools for the non-expert.

ecology↗