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Biology subjects

Dube, S.

Publications and source records attributed to Dube, S..

2 recordsLinked to original sources

Perinatal Shifts in Fecal-Derived Metabolites and Associations with Postpartum Depression

IntroductionResearch on maternal depression is largely limited to static, blood-derived biomarkers in the postpartum period and mechanistic targets derived from populations outside the physiological contexts of pregnancy and postpartum, resulting in critical gaps in understanding context-specific mechanisms underlying this debilitating condition. ObjectivesTo examine temporal shifts in the maternal gut metabolome and associations between pregnancy-specific shifts and postpartum depression (PPD). MethodsWe applied untargeted metabolomics (UPLC-MS/MS) to fecal samples collected from participants (N= 25) enrolled in the Maternal and Infant NutriTion (MINT) study. Random forest analysis was used to identify key pathways and metabolites contributing to temporal shifts. Fold change analysis and paired t-tests were used to quantify the magnitude and significance of metabolite changes. Associations between pregnancy-specific changes and PPD (Edinburgh Postnatal Depression Scale at 6 weeks) were identified using Pearsons correlation. ResultsLipid, amino acid, and xenobiotic metabolism emerged as core pathways driving temporal changes in the maternal gut metabolome. The most pronounced shifts occurred from 35 weeks gestation to postpartum, with 55 metabolites significantly altered compared to 24 from 24-to 35 weeks gestation and 26 from 24 weeks gestation to postpartum. Of the 29 metabolites associated with PPD; 68.9% were metabolic intermediates, primarily involved in lipid and amino acid metabolism (58.6%). ConclusionsThis study provides some of the first evidence of temporal shifts in the maternal gut metabolome and associations with PPD, highlighting the importance of lipid and amino acid metabolism and laying the groundwork for future multi-omics research.

systems biology↗

Action potential-coupled Rho GTPase signaling drives presynaptic plasticity

In contrast to their postsynaptic counterparts, the contributions of activity-dependent cytoskeletal signaling to presynaptic plasticity remain controversial and poorly understood. To identify and evaluate these signaling pathways, we conducted a proteomic analysis of the presynaptic cytomatrix using in vivo biotin identification (iBioID). The resultant proteome was heavily enriched for actin cytoskeleton regulators, including Rac1, a Rho GTPase that activates the Arp2/3 complex to nucleate branched actin filaments. Strikingly, we find Rac1 and Arp2/3 are closely associated with presynaptic vesicle membranes and negatively regulate synaptic vesicle replenishment at both excitatory and inhibitory synapses. Using optogenetics and fluorescence lifetime imaging, we show this pathway bidirectionally sculpts short-term synaptic depression and that its presynaptic activation is coupled to action potentials by voltage-gated calcium influx. Thus, this study provides a new proteomic framework for understanding presynaptic physiology and uncovers a previously unrecognized mechanism of actin-regulated short-term presynaptic plasticity that is conserved across cell types.

neuroscience↗