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Biology subjects

Drienovska, I.

Publications and source records attributed to Drienovska, I..

2 recordsLinked to original sources

Rational Design of a Photoactivated Fluorescent Probe for Thiol-ene Mediated Protein Labelling

Fluorescent labelling of biomolecules enables the visualization and tracking of molecular processes in cells, providing insights into cellular function and disease mechanisms. Despite recent advances in bioorthogonal labelling, efficient and site-selective strategies for targeting alkene functionalities remain limited. Here, we report AbzSH, a compact aminobenzamide-based fluorescent thiol probe for selective alkene labelling through thiol-ene ligation. Photoinduced ligation proceeds under mild, radical-mediated conditions in aqueous media and exhibits broad substrate compatibility, including carbohydrate, amino acid, and steroid scaffolds. The method is readily extended to protein labelling, enabling selective modification of both chemically functionalized proteins and engineered proteins containing genetically encoded alkene motifs. Efficient and chemoselective labelling was further demonstrated in complex cell lysates, highlighting the robustness of the approach in biologically relevant environments. Collectively, these results establish AbzSH as a versatile fluorescent probe for alkene-directed biomolecular labelling and provide a broadly applicable platform for chemical biology, molecular imaging, proteomics, and drug discovery.

biochemistry↗

Deciphering the evolutionary origin of the stereoselectivity of short-chain dehydrogenases in the oxidation of the monoterpenol 1-borneol

Enzyme engineering has produced numerous methods to optimize enzymes for biotechnological processes; however, less is known about how natural evolution creates new functionalities. We investigate the evolutionary emergence of enantioselectivity in plant borneol dehydrogenases (BDHs), which feature hydrophobic active-sites and are enantioselective towards dibornane-type monoterpenols. Ancestral sequence reconstruction provided a trajectory from the oldest unselective BDH ancestor N30 (E=12) toward a more recent selective ancestor N32, involving 19 mutations: 18 mutations are peripheral, one (I111L) occurs in the active-site. The mutation L111I in the hydrophobic pocket increased the selectivity of N30, while the back-mutation I111L decreased the selectivity of N32. Additional peripheral mutations (V136L/G169A/V183I) were required for high selectivity. Crystal structures suggested that protein dynamics, rather than structural changes shape these catalytic properties; this was confirmed by ML/MM simulations of ligand binding. Funnel-metadynamics simulations revealed a correlation between the active-sites solvent-accessible surface area (SASA) and selectivity. This potential evolutionary pathway shapes enantioselectivity, and guides future enzyme engineering campaigns.

biochemistry↗