Search bioRxiv⌕ Search

Biology subjects

Draper-Barr, G.

Publications and source records attributed to Draper-Barr, G..

2 recordsLinked to original sources

Sla2 is a core interaction hub for Clathrin Light Chain and the Pan1/End3/Sla1Complex

The interaction network of Sla2, a vital adaptor protein in the endocytic mid-coat, undergoes constant rearrangement incorporating or replacing interacting proteins over time. Sla2 serves as a scaffold linking the membrane to the actin cytoskeleton, with this role modulated by Clathrin Light Chain (CLC), which inhibits Sla2s function under certain conditions. We show that Sla2 has two independent binding sites for CLC: one previously described in homologs of Fungi (Sla2) and Metazoa (Hip1R), and a second found only in Fungi. We present the structural model of the Sla2 actin-binding domains in the context of regulatory structural domains by electron cryo-microscopy. We provide an interaction map of Sla2 and the regulatory proteins Sla1 and Pan1, predicted by AI modelling and confirmed by molecular biophysics techniques. Pan1 competes with CLC for the conserved binding site on Sla2. These results enhance the mapping of crucial interactions at endocytic checkpoints and highlight the divergence between Metazoa and Fungi in this vital process. TeaserSla2 forms complexes with three regulatory proteins in the endocytic pit, two of which compete for the same site

molecular biology↗

Raynals, an online tool for the analysis of dynamic light scattering

Dynamic light scattering (DLS) is routinely employed to assess the homogeneity and size distribution profile of samples containing microscopic particles in suspension or solubilised polymers. In this work, we introduce Raynals, an user-friendly software for the analysis of single-angle DLS data that uses the Tikhonov-Phillips regularisation. Performance is evaluated on simulated and experimental data, generated by different DLS instruments, for several proteins and gold nanoparticles. DLS data can be easily misinterpreted and the simulation tools available in Raynals allow understanding of the limitations of the measurement and its resolution. It has been designed as a tool to address quality control of biological samples, during sample preparation and optimisation, and it helps in the detection of aggregates showing the influence of large particles. Last, Raynals provides flexibility in the way the data is presented, allows exporting publication-quality figures, it is free for academic use, and can be accessed online on the eSPC data analysis platform at spc.embl-hamburg.de.

biophysics↗