Biology subjects

Downs, C.

Publications and source records attributed to Downs, C..

4 recordsLinked to original sources

bioRxiv2025

Island-wide population genomic analysis of the coastal shrub, beach naupaka (Scaevola taccada L.), on Oahu

PremisePlant species face a myriad of challenges including climate change and habitat destruction. On Oahu in Hawaii, Scaevola taccada L., a coastal dune shrub, is highly impacted by human activities, but is also experiencing environmental threats like sea level rise. Despite its ubiquity across Pacific islands, the extent and distribution of genetic diversity in this species is unclear. Further, it is currently unclear how many times S. taccada arrived on Oahu. MethodsWe surveyed population genomic diversity using ddRAD-seq in eight populations of S. taccada on Oahu. Using principal components and STRUCTURE analyses, we assessed whether genetic diversity was structured geographically across the island. Additionally, we generated whole genome sequences from five herbarium accessions and used a publicly available genome to construct a haplotype network to infer the number of times S. taccada arrived on Oahu. We analyzed climate data and leaf thickness measurements to understand how patterns of genetic diversity were correlated with environmental and trait variation. ResultsOur analyses pointed to a trend in which two populations in protected areas were both genetically differentiated from, and harbored less genetic diversity than, human dominated areas. Further analysis of genetic structure via a PCA and pairwise FST indicated a secondary geographic pattern in our dataset by which western beach populations were differentiated from eastern beach populations. The chloroplast haplotype network suggested a single arrival on Oahu. ConclusionsOur results demonstrate that S. taccada populations in protected natural areas harbored unique genetic variation compared to human dominated beach parks, but that protected populations also had significantly reduced genetic variation compared to other populations.

plant biology↗

bioRxiv2024

Metabolic responses to cold: thermal physiology of native common waxbills (Estrilda astrild)

Ecophysiological studies of invasive species tend to focus on captive individuals and their invasive range. However, the importance of gaining a thorough understanding of their physiology in their native range, where autecological knowledge is limited, has played a crucial role in assessing species ecophysiological responses to the often novel environmental conditions encountered in their invasive range. Here, we investigated the ecophysiological characteristics of a population of the wild-caught common waxbill (Estrilda astrild), a successful global invader, in part of its native range (South Africa). We investigated how this species adjusts its resting metabolic rate over a range of temperatures to identify its thermoneutral zone (TNZ) as an indicator of a species thermal tolerance. The observed TNZ curve predominantly followed the classic Scholander-Irving model, with metabolic rates increasing linearly at temperatures outside the TNZ. However, we found an inflection point at moderately cold temperatures (16{degrees}C) where the common waxbill began to decrease its metabolic rate. This finding highlights the potential use of an energy-saving strategy as an adaptive response to cold, such as facultative hypothermic responses through a reduction in body temperature, which may explain their success as an invasive species. We argue that although metabolic infection points have been repeatedly identified in studies of TNZ, the specific mechanisms behind metabolic down-regulation at low temperatures remain underexplored in the literature. We therefore suggest that future research should focus on investigating body temperature variation, with particular emphasis on its potential contribution to metabolic adaptation in colder environments.

ecology↗

bioRxiv2023

Bacterial sepsis triggers stronger transcriptomic responses in larger primates

Empirical data relating body mass to immune defense against infections remain limited. Although the Metabolic Theory of Ecology predicts that larger organisms would have weaker immune responses, recent studies have suggested that the opposite may be true. These discoveries have led to the Safety Factor hypothesis, which proposes that larger organisms have evolved stronger immune defenses because they carry greater risks of exposure to pathogens and parasites. In this study, we simulated sepsis by exposing blood from nine primate species to a bacterial lipopolysaccharide (LPS), measured the relative expression of immune and other genes using RNAseq, and fit phylogenetic models to determine how gene expression was related to body mass. In contrast to non-immune-annotated genes, we discovered hypermetric scaling in the LPS-induced expression of innate immune genes, such that large primates had a disproportionately greater increase in gene expression of immune genes compared to small primates. Hypermetric immune gene expression appears to support the Safety Factor hypothesis, though this pattern may represent a balanced evolutionary mechanism to compensate for lower per-transcript immunological effectiveness. This study contributes to the growing body of immune allometry research, highlighting its importance in understanding the complex interplay between body size and immunity over evolutionary timescales. Author SummaryUnderstanding the relationship between an animals size and its ability to defend against disease can inform predictions about evolutionary tradeoffs and susceptibility to infection. Two major theories - the Metabolic Theory of Ecology (MTE) and the Safety Factor hypothesis - offer opposing views on how body size influences it immune defenses. In this study, we compared the immune gene expression of nine primate species to a simulated bacterial infection. We found that larger species mounted a stronger transcriptional immune response, consistent with either the Safety Factor hypothesis or an evolutionary pressure to compensate for and balance the effects expected in the context of the MTE.

evolutionary biology↗

bioRxiv2023

Expanded diversity of hemoplasmas in rare and undersampled Neotropical bats

Hemotropic mycoplasmas are emerging as a model system for studying bacterial pathogens in bats, but taxonomic coverage of sampled host species remains biased. We leveraged a long-term field study in Belize to uncover novel hemoplasma diversity in bats by analyzing 80 samples from 19 species, most of which are infrequently encountered. PCR targeting the partial 16S rRNA gene found 41% of bats positive for hemoplasmas. Phylogenetic analyses found two novel host shifts of hemoplasmas, four entirely new hemoplasma genotypes, and the first hemoplasma detections in four bat species. One of these novel hemoplasmas (from Neoeptesicus furinalis) shared 97.6% identity in the partial 16S rRNA gene to a human hemoplasma (Candidatus Mycoplasma haemohominis). Additional analysis of the partial 23S rRNA gene allowed us to also designate two novel hemoplasma species, in Myotis elegans and Phyllostomus discolor, with the proposed names Candidatus Mycoplasma haematomyotis sp. nov. and Candidatus Mycoplasma haematophyllostomi sp. nov., respectively. Our analyses show that additional hemoplasma diversity in bats can be uncovered by targeting rare or undersampled host species.

microbiology↗