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Doostmohammadi, J.

Publications and source records attributed to Doostmohammadi, J..

3 recordsLinked to original sources

Climbing fibers encode the gradient of a loss function for the cerebellum

Neurons in the brain are often many synapses away from motoneurons, yet if a movement results in error, each distant neuron needs a teacher that considers its specific contribution to production of that movement. This credit assignment problem is solved in machine learning via gradient descent of a loss function, where the loss defines the subjective cost incurred by error. Does the brain use gradient descent to teach individual neurons? We trained marmosets to make saccades to visual targets and then varied the loss by assigning reward value to each target. The climbing fibers, which are the teachers of Purkinje cells (P-cells) in the cerebellum, used a multiplicative encoding to scale the spatial properties of the error vector with its reward properties, incorporating reward prediction errors. Using spike-triggered suppression of P-cells, we quantified the potent vector that mapped each P-cells output to eye movements and discovered that the climbing fibers were not merely transmitting errors. Rather, they were providing a signal that was, on average, proportional to the dot product of the reward dependent error vector upon the P-cells potent vector. Thus, the climbing fibers solved the credit assignment problem by providing the gradient of a loss function with respect to the output of their individual P-cells.

neuroscience↗

Sharp wave ripples in macaque V1 and V4 are modulated by top-down visual attention

Sharp-wave ripples (SWRs) are highly synchronous neuronal activity events. They have been predominantly observed in the hippocampus during offline states such as pause in exploration, slow-wave sleep and quiescent wakefulness. SWRs have been linked to memory consolidation, spatial navigation, and spatial decision-making. Recently, SWRs have been reported during visual search, a form of remote spatial exploration, in macaque hippocampus. However, the association between SWRs and multiple forms of awake conscious and goal-directed behavior is unknown. We report that ripple activity occurs in macaque visual areas V1 and V4 during focused spatial attention. The frequency of ripples is modulated by characteristics of the stimuli, by spatial attention directed toward a receptive field, and by the size of the attentional focus. Critically, the monkeys reaction times in detecting behaviorally relevant stimulus changes was affected on trials with SWRs. These results show that ripple activity is not limited to hippocampal activity during offline states, rather they occur in the neocortex during active attentive states and vigilance behaviors.

neuroscience↗

A fully automated spike sorting algorithm using t-distributed neighbor embedding and density based clustering

In this study, a new spike sorting method was developed based on a combination of two methods, t-Distributed Stochastic Neighbor Embedding (t-SNE) and Density-Based Spatial Clustering of Applications with Noise (DBSCAN). Parameters of both methods were simultaneously optimized using a Genetic Algorithm (GA) using a simulated dataset containing 2 to 20 simultaneously recorded neurons. The performance of this method was evaluated using both the simulated dataset as well as real multichannel electrophysiological data. The results indicated that our fully automated algorithm using t-SNE-DBSCAN outperforms other state-of-the-art algorithms and human experts in spike sorting especially when there are a large number of simultaneously recorded units. Our algorithm also determines the noise waveforms and has an overall high sensitivity, precision and accuracy for correctly classifying waveforms belonging to each neuron (all >90%) without the need for manual corrections afterwards. Our method can be a crucial part of the analysis pipeline in particular when manual sorting of units is becoming prohibitive due to the sheer number of recorded neurons per session.

neuroscience↗