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Biology subjects

Dong, C. M.

Publications and source records attributed to Dong, C. M..

3 recordsLinked to original sources

Short-term fluctuating and long-term divergent selection on sympatric Monkeyflowers: insights from decade-spanning reciprocal transplants

Sympatric species are often locally adapted to distinct microhabitats, yet temporal variation may cause local maladaptation and weaken species boundaries, particularly during extreme climatic events. To examine the interplay between spatially and temporally varying selection, we studied sympatric Monkeyflowers occupying dramatically different niches, Mimulus guttatus and M. laciniatus. We conducted three replicated reciprocal transplants and combined them with previous experiments to leverage a dataset of five single-year transplants spanning a decade. We estimated the strength of phenotypic selection on experimental hybrids in each species habitat across years of drastically differing snowpack. If ecological isolation maintains species differences, we predicted divergent phenotypic selection between habitats consistent with species differences and local adaptation. We found spatial and interannual fluctuations in phenotypic selection, often in unpredicted directions, with temporal variation associated with snowpack. In a combined-year analysis, we detected a significant difference in the strength of long-term selection on flowering time, a key temporally isolating and adaptative trait, between species habitats, suggesting that selection may reinforce species boundaries despite short-term fluctuations. Finally, we found parental local adaptation varied among years where M. laciniatus was locally adapted during low snowpack years, while an extreme snowfall event contributed to overall local maladaptation of M. guttatus.

evolutionary biology↗

Long read assembly of the pandemic strain of Austropuccinia psidii (myrtle rust) reveals an unusually large (gigabase sized) and repetitive fungal genome.

Austropuccinia psidii, originating in South America, is a globally invasive fungal plant pathogen that causes rust disease on Myrtaceae. Several biotypes are recognized, with the most widely distributed pandemic biotype spreading throughout the Asia-Pacific and Oceania regions over the last decade. Austropuccinia psidii has a broad host range with more than 480 myrtaceous species. Since first detected in Australia in 2010, the pathogen has caused the near extinction of at least three species and negatively affected commercial production of several Myrtaceae. To enable molecular and evolutionary studies into A. psidii pathogenicity, we assembled a highly contiguous genome for the pandemic biotype. With an estimated haploid genome size of just over 1 Gb (gigabases), it is the largest assembled fungal genome to date. The genome has undergone massive expansion via distinct transposable element (TE) bursts. Over 90% of the genome is covered by TEs predominantly belonging to the Gypsy superfamily. These TE bursts have likely been followed by deamination events of methylated cytosines to silence the repetitive elements. This in turn led to the depletion of CpG sites in transposable elements and a very low overall GC content of 33.8%. The overall gene content is highly conserved, when compared to other closely related Pucciniales, yet the intergenic distances are increased by an order of magnitude indicating a general insertion of TEs between genes. Overall, we show how transposable elements shaped the genome evolution of A. psidii and provide a greatly needed resource for strategic approaches to combat disease spread.

genomics↗

When polymorphism and monomorphism meet: discordant genomic and phenotypic clines across a lizard contact zone

Colour polymorphism can promote rapid evolution and speciation, particularly when populations differ in the number or composition of morphs. The contact zone between Ctenophorus modestus (swift dragon) and C. decresii (tawny dragon) is a compelling study system in which to examine evolutionary processes and outcomes when polymorphic and monomorphic populations meet. Ctenophorus modestus is polymorphic for male throat coloration and lacks ultraviolet (UV) reflectance while C. decresii is monomorphic with UV-blue throats. We characterised genomic and phenotypic clines across the contact zone based on single nucleotide polymorphisms, the mitochondrial ND4 gene, and male colour traits, and concurrently assessed the phenotype of captive-bred F1 hybrids. Our results indicate that genomic introgression is asymmetric, with high frequencies of backcrossing to C. modestus but not C. decresii, accompanied by the prevalence of the C. modestus mtDNA haplotype in hybrids. The clines for throat phenotype are abrupt and displaced towards the range of C. decresii, relative to the genetic and dorsolateral phenotype clines. By contrast, both throat and dorsolateral phenotypes in captive-bred F1 hybrids are intermediate. Our results are consistent with the hypothesis that throat coloration, a polymorphic sexual signal in C. modestus, is the target of selection during incipient speciation and provide insight into the microevolutionary processes that may link polymorphism and speciation.

evolutionary biology↗