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Biology subjects

Doncaster, C. P.

Publications and source records attributed to Doncaster, C. P..

2 recordsLinked to original sources

Network-based metrics of community resilience and dynamics in lake ecosystems

Some ecosystems undergo abrupt transitions to a new regime after passing a tipping point in an exogenous stressor, for example lakes shifting from a clear to turbid eutrophic state in response to nutrient-enrichment. Metrics-based resilience indicators have been developed as early warning signals of these shifts but have not always proved reliable indicators. Alternative approaches focus on changes in the composition and structure of an ecosystem, which can require long-term food-web observations that are typically beyond the scope of monitoring. Here we prototype a network-based algorithm for estimating ecosystem resilience, which reconstructs past ecological networks solely from palaeoecological abundance data. Resilience is estimated using local stability analysis, and eco-net energy: a neural network-based proxy for ecological memory. We test the algorithm on modelled (PCLake+) and empirical (lake Erhai) data. The metrics identify increasing diatom community instability during eutrophication in both cases, with eco-net energy revealing complex eco-memory dynamics. The concept of ecological memory opens a new dimension for understanding ecosystem resilience and regime shifts, with eco-memory potentially increasing ecosystem resilience by allowing past memorised eco-network states to be recovered after disruptions.

ecology↗

Epidemiological and ecological modelling reveal diversity in microbial population structures from a cross-sectional community swabbing study

Respiratory tract infections (RTI) are responsible for over 4 million deaths per year worldwide with pathobiont carriage a required precursor to infection. Through a cross-sectional community-based nasal self-swabbing study we sought to determine carriage epidemiology for respiratory pathogens amongst bacteria (Streptococcus pneumoniae, Haemophilus influenza, Moraxella catarrhalis, Staphylococcus aureus, Pseudomonas aeruginosa and Neisseria meningitidis) and viruses (RSV, Influenza viruses A and B, Rhinovirus/Enterovirus, Coronavirus, Parainfluenza viruses 1-3 and Adenovirus (ADV)). Carriage of bacterial and viral species was shown to vary with participant age, recent RTI and the presence of other species. The spatial structure of microbial respiratory communities was less nested (more disordered) in the young (0-4 years) and those with recent RTI. Species frequency distributions were flatter than random expectation in young individuals (X2 = 20.42, p = 0.002), indicating spatial clumping of species consistent with facilitative relationships amongst them. Deviations from a neutral model of ecological niches were observed for samples collected in the summer and from older individuals (those aged 5-17, 18-64 and [≥]65 years) but not in samples collected from winter, younger individuals (those aged 0-4 years), individuals with recent RTI and individuals without recent RTI, demonstrating the importance of both neutral and niche processes in respiratory community assembly. The application of epidemiological methods and ecological theory to sets of respiratory tract samples has yielded novel insights into the factors that drive microbial community composition, such as seasonality and age, as well as species patterns and interactions within the nose.

microbiology↗