Biology subjects

Dominguez-Rodrigo, M.

Publications and source records attributed to Dominguez-Rodrigo, M..

4 recordsLinked to original sources

bioRxiv2025

Industrialization drives convergent microbial and physiological shifts in the human metaorganism

Understanding how host lifestyle and industrialization shape the human gut microbiome and intestinal physiology requires multimodal analyses across diverse global host contexts. Here, we generate multivariate data from the Global Microbiome Conservancy cohort, including gut microbiome, IgA-sequencing, host genotyping, diet, lifestyle and fecal biomarker profiles, to investigate host-microbiome interactions across gradients of industrialization and geography. We show that industrialization is associated with homogenized microbial compositions, reduced microbial diversity, and lower community stability, independent of host confounders. We further show that industrialization is linked to elevated markers of gut stress, increased IgA secretion, and altered patterns of IgA-bacteria interactions. Finally, we show that microbiome-based disease predictors trained on industrialized populations lose accuracy in less industrialized cohorts, highlighting limited cross-population transferability. Together, our results suggest profound restructuring of host-microbiome interactions due to industrialized lifestyles, and emphasize the need for inclusive, globally representative data to improve translational microbiome applications across diverse human populations.

microbiology↗

bioRxiv2025

Earliest Evidence of Elephant Butchery at Olduvai Gorge (Tanzania) Reveals the Evolutionary Impact of Early Human Megafaunal Exploitation

The role of megafaunal exploitation in early human evolution remains debated. Occasional use of large carcasses by early hominins has been considered by some as opportunistic, possibly a fallback dietary strategy, and for others a more important survival strategy. At Olduvai Gorge, evidence for megafaunal butchery is scarce in the Oldowan of Bed I, but becomes more frequent and widespread after 1.8 Ma in Bed II, coinciding with the emergence of Acheulean technologies. Here, we present the earliest direct evidence of proboscidean butchery, including a newly documented elephant butchery site (EAK). This shift in behavior is accompanied by larger, more complex occupation sites, signaling a profound ecological and technological transformation. Rather than opportunistic scavenging, these findings suggest a strategic adaptation to megafaunal resources, with implications for early human subsistence and social organization. The ability to systematically exploit large prey represents a unique evolutionary trajectory, with no direct modern analogue, since modern foragers do so only episodically.

paleontology↗

bioRxiv2020

Industrialization is associated with elevated rates of horizontal gene transfer in the human microbiome

Horizontal Gene Transfer, the process by which bacteria acquire new genes and functions from non-parental sources, is common in the human microbiome 1,2. If the timescale of HGT is rapid compared to the timescale of human colonization, then it could have the effect of personalizing bacterial genomes by providing incoming strains with the genes necessary to adapt to the diet or lifestyle of a new host. The extent to which HGT occurs on the timescale of human colonization, however, remains unclear. Here, we analyzed 6,188 newly isolated and sequenced gut bacteria from 34 individuals in 9 human populations, and show that HGT is more common among bacteria isolated from the same human host, indicating that the timescale of transfer is short compared to the timescale of human colonization. Comparing across 9 human populations reveals that high rates of transfer may be a recent development in human history linked to industrialization and urbanization. In addition, we find that the genes involved in transfer reflect the lifestyle of the human hosts, with elevated transfer of carbohydrate metabolism genes in hunter gatherer populations, and transfer of antibiotic resistance genes among pastoralists who live in close contact with livestock. These results suggest that host-associated bacterial genomes are not static within individuals, but continuously acquire new functionality based on host diet and lifestyle.

microbiology↗

bioRxiv2019

The role of tectonics and hydrothermalism in early human evolution at Olduvai Gorge

Hominin encephalization has been at the centre of debates concerning human evolution with a consensus on a greater role for improved dietary quality. To sustain the energetic demands of larger brains, cooking was likely essential for increasing the digestibility and energy gain of meat and readily available, yet toxic starches. Here, we present the oldest geochemical evidence for a landscape influenced by tectonic activity and hydrothermal features that potentially shaped early hominin behaviour at Olduvai Gorge. Although use of fire at this time is controversial, hot springs may have provided an alternative way to thermally process dietary resources available in the 1.7 Myo Olduvai wetland. Our data supports the presence of an aquatic-dominated landscape with hydrothermal features that offered hominins new opportunities to hunt and cook readily available tubers and herbivore prey at the emergence of the Acheulean technology. Future studies should further examine whether hydrothermalism similarly influenced other critical aspects of human evolution.

evolutionary biology↗