Biology subjects

Dixon, R. A.

Publications and source records attributed to Dixon, R. A..

4 recordsLinked to original sources

bioRxiv2025

Resting-state functional MRI derivatives: A dataset derived from the The Comprehensive Assessment of Neurodegeneration and Dementia Study

Resting-state functional connectivity (RSFC) holds promise for the detection and characterisation of dementia. The Comprehensive Assessment of Neurodegeneration and Dementia (COMPASS-ND) Study, by the Canadian Consortium on Neurodegeneration in Aging (CCNA), provides a unique resource to study deeply phenotyped neurodegenerative conditions. We present RSFC derivatives for 784 participants (data release 7 of the cohort) who were either cognitively unimpaired or diagnosed primarily with Alzheimers disease (AD), mixed dementia (AD with a vascular component), mild cognitive impairment (MCI), vascular MCI, frontotemporal dementia, Parkinsons disease with or without MCI or dementia, Lewy body disease or subjective cognitive impairment. Functional MRI scans were preprocessed using fMRIPrep, and time-series and whole-brain connectomes generated using three atlases at multiple resolutions, denoised using seven different techniques. High-motion artifacts were managed using a liberal quality control threshold appropriate for an older clinical population, resulting in data from 680 participants. These derivatives are made available to the research community to accelerate research on RSFC biomarkers of neurodegenerative disease, reducing duplication of effort, saving computational resources, and improving standardisation across studies.

neuroscience↗

bioRxiv2021

Development of a Freeze-Dried CRISPR-Cas12 Sensor for Detecting Wolbachia in the Secondary Science Classroom

Training the future synthetic biology workforce requires opportunity and exposure to biotechnology concepts and activities in secondary education. Detecting Wolbachia bacteria in arthropods using PCR has become a common way for secondary students to investigate and apply DNA technology in the science classroom. Despite this framework, cutting-edge biotechnologies like CRISPR-based diagnostics have yet to be widely implemented in the classroom. To address this gap, we present a freeze-dried CRISPR-Cas12 sensing reaction to complement traditional DNA technology education and teach synthetic biology concepts. The reactions accurately detect Wolbachia from arthropod-derived PCR samples in under 2 hours and can be stored at room temperature for over a month without appreciable degradation. The reactions are easy-to-use and cost less than $40 to implement for a classroom of 22 students including the cost of reusable equipment. We see this technology as an accessible way to incorporate synthetic biology education into existing biology curriculum, which will expand biology educational opportunities in science, technology, engineering, and mathematics (STEM) education.

synthetic biology↗

bioRxiv2018

A Novel in vivo Model of Anaerobic Infection: The Investigation of Clostridium perfringens in Galleria mellonella Larvae.

ABSTRACTImportant research progress into the mechanisms of Clostridium perfringens associated diseases (CPAD) has been slowed by the lack of a reliable infection model. Wax moth larvae (Galleria mellonella) have emerged as a viable alternative to traditional mammalian organisms since they are economic, survive at 37{degrees}C and require no specialist equipment. This study aims to establish whether G. mellonella larvae can be developed as a viable model for the study of CPAD and their suitability for studying novel treatment strategies. In addition, the study demonstrates a novel time-lapse approach to data collection. Mortality and morbidity rates of larvae challenged with 105 CFU of C. perfringens isolates from various sources were observed over 72h and dose response data obtained using inoculum sizes of 10 - 105 CFU. Phenoloxidase enzyme activity was investigated as a marker for immune response and tissue burden by histopathological techniques. Results show that C. perfringens is pathogenic towards G. mellonella although potency varies between isolates. Infection activates the melanisation pathway resulting in melanin deposition but no increase in enzyme activity was observed. Efficacy of antibiotic therapy (penicillin G, bacitracin, neomycin and tetracycline) administered parenterally loosely correlates with that of in vitro analysis. The findings suggest G. mellonella can be a useful in vivo model of infection when investigating CPAD. Although they are unlikely to replace traditional mammals they may be useful as a pre-screening assay for virulence of C.perfringens strains or as a simple, cheap and rapid in vivo assay in the development and pre-clinical development of novel therapeutics.\n\nHighlightsO_LINovel in vivo model for the study of Clostridium perfringens infection.\nC_LIO_LINovel time-lapse approach to data collection.\nC_LIO_LIFirst report of the use of G. mellonella model for characterizing virulence in C. perfringens strains.\nC_LIO_LIAntibiotic therapy in the model that loosely correlates with in vitro testing.\nC_LI

microbiology↗

bioRxiv2018

Alzheimer’s environmental and genetic risk scores are differentially associated with ‘g’ and δ

IntroductionWe investigated the association of the Australian National University Alzheimers Disease Risk Index (ANU-ADRI) and an AD genetic risk score (GRS) with cognitive performance.\n\nMethodsThe ANU-ADRI (composed of 11 risk factors for AD) and GRS (composed of 25 AD risk loci) were computed in 1,061 community-dwelling older adults. Participants were assessed on 11 cognitive tests and activities of daily living. Structural equation modelling was used to evaluate the association of the ANU-ADRI and GRS with: 1) general cognitive ability (g) 2) dementia related variance in cognitive performance ({delta}) and 3) verbal ability, episodic memory, executive function and processing speed.\n\nResultsA worse ANU-ADRI score was associated with poorer performance in g, {delta}, and each cognitive domain. A worse GRS was associated with poorer performance in {delta} and episodic memory.\n\nDiscussionThe ANU-ADRI was broadly associated with worse cognitive performance, validating its further use in early dementia risk assessment.\n\nHighlightsO_LIAn environmental/lifestyle dementia risk index is broadly associated with cognitive performance\nC_LIO_LIAn Alzheimers genetic risk score is associated with dementia severity and episodic memory\nC_LIO_LIThe environmental risk index is more strongly associated with dementia severity than genetic risk\nC_LI\n\nResearch in ContextO_ST_ABSSystematic ReviewC_ST_ABSThe authors reviewed the literature using online databases (e.g. PubMed). Previous research has highlighted the need for dementia risk assessment tools to be evaluated on outcomes prior to dementia onset, such as cognitive performance. The relevant citations have been appropriately cited.\n\nInterpretationThe Australian National University Alzheimers Disease Risk Index (ANU-ADRI) was more broadly associated with cognitive performance than Alzheimers genetic risk. For the ANU-ADRI, stronger effects were observed for dementia-related variance in cognitive task performance that for variance in general cognitive function. This suggests that ANU-ADRI is more specifically associated with dementia-related processes and further validates its use in early risk assessment for dementia.\n\nFuture DirectionsAccordingly, future studies should seek to evaluate the association of the ANU-ADRI and genetic risk with AD biomarkers and longitudinal cognitive performance to evaluate differential trajectories in g and {delta}.

genetics↗