Biology subjects

Dillon, J.

Publications and source records attributed to Dillon, J..

11 recordsLinked to original sources

bioRxiv2026

Identification and functional investigation of Octopus vulgaris TRPV channels as potential nociceptors in cephalopods

Nociception is an essential response for organisms to avoid potential harm and promote survival. Its molecular determinants are largely conserved across Eumetazoa. TRPV receptors are polymodal ion channels exhibiting selective peripheral expression and functional coupling that underpins nociception and pain modulation in complex organisms. However, the execution of protective behaviours triggered by TRPVs is also found in species with a simpler nervous organisation, thus encouraging their investigation in invertebrate model organisms to increase understanding of animal nociception. Cephalopods represent an interesting invertebrate phylum with respect to the evolution of the nervous system, whose complexity suggests it might support pain-like states that exist in vertebrates. This possibility is reflected by the inclusion of cephalopods in the UK and EU animal welfare legislations. Despite this, there is poor characterisation of cephalopod molecular nociceptors. For this reason, we used in silico analysis to identify two TRPV channels in Octopus vulgaris genome (Ovtrpv1 and Ovtrpv2). We validated the putative transcript sequences and highlighted prevalent expression in sensory tissues. We investigated the functional competence of these TRPVs by heterologously expressing Ovtrpv1 and Ovtrpv2 cDNA into Caenorhabditis elegans null mutants of the orthologous genes, ocr-2 and osm-9 respectively. Ovtrpvs successfully rescued the aversive response to chemical and mechanical noxious stimuli in the C. elegans mutants, suggesting these receptors are polymodal nociceptors. Additionally, complementary investigation using Xenopus laevis oocytes showed Ovtrpv1 and Ovtrpv2 form an active heteromeric channel gated by nicotinamide. This study highlights Ovtrpvs as an important route to better understand nociceptive detection in cephalopods.

neuroscience↗

bioRxiv2026

In silico identification and deorphanisation of an allatostatin C GPCR system in the cephalopod Octopus vulgaris reveals two receptors with distinct potency

Neuropeptide signalling is transversally important in all living animals as it constitutes the basis of cellular communication. The investigation of the functional roles of peptide signalling represents an important route to understanding evolution of specific physiological traits and behaviours in metazoans. Allatostatins and their cognate receptors are classically defined as invertebrate neuropeptide hormones. Among these, allatostatin C was firstly associated with insect development. However, accumulating evidence recognises the presence of allatostatin C as a conserved signalling molecule across all invertebrate lineages, with reported functions spanning from regulation of feeding and digestion to immune responses and modulation of core nociception. Here we combined in silico and experimental approaches to reveal the interacting molecular determinants of the allatostatin C signalling in the cephalopod Octopus vulgaris, a scientifically and culturally interesting invertebrate for its centralised nervous system, capable of top-down modulation of complex behaviours. This resolved a single prepropeptide encompassing allatostatin C peptide (OvAstC), whose conserved mature form (AVITACYFQAVSCY) was shown to differentially activate two identified cognate receptors (OvAstCR1 and OvAstCR2) when heterologously expressed in the recombinant system HEK293G5A. PCR analysis carried out in O. vulgaris tissues, showed a broad distribution of OvAstC and OvAstCRs. This wide expression across nervous, immune and digestive tissues is consistent with a pleiotropic role of this peptidergic system. Together, the opioid/somatostatin-related phylogenetic placement of OvAstCRs and the broad expression of OvAstC components in nervous and sensory tissues nominate this pathway as a candidate for neuromodulatory control of sensory processing, including nociception, with potential welfare relevance in cephalopods. Significance statementCephalopods represent an evolutionarily distinctive molluscan lineage that evolved a centralised nervous system capable of displaying advanced learning and behavioural complexity compared with other invertebrates. These features, speculated to allow elaboration of pain-like states, granted cephalopods inclusion as the only invertebrate taxon requiring protection under European legislations when used in research. Investigation of the neuropeptide signalling in cephalopods is currently understudied despite its crucial role in regulating broad physiological functions in organisms. This study identified for the first time a single allatostatin C peptide and two cognate receptors in Octopus vulgaris. Our characterisation of a putative endogenous allatostatin C system in octopus, the accumulating evidence of its central role in invertebrate antinociception and its evolutionary relationship with the vertebrate-exclusive analgesic opioid family, represent a critical starting point for a more in-depth analysis of the physiological role of allatostatin C in this subclass of molluscs, with important welfare implications.

evolutionary biology↗

bioRxiv2025

Identification of molecular nociceptors in Octopus vulgaris through functional characterisation in Caenorhabditis elegans

Nociception, a phenomenon crucial for animal survival, deploys evolutionarily conserved molecular mechanisms. Among invertebrate species, cephalopods are of particular interest as they possess a well-developed brain speculated to be able to encode pain-like states. This has led to their inclusion in the Directive 2010/63 EU for welfare protection. However, the molecular mechanisms of nociception in cephalopods are still poorly characterised and it is important to address this knowledge gap to better understand cephlapods capacity to express pain states. Here we describe a bioinformatic pipeline utilising conserved nociceptive genes, to identify the orthologous candidates in the Octopus vulgaris transcriptome. We identified 51 genes we predict to function in nociception. These add to the mechanosensory TRPN and the unique chemotactile receptors recently identified in octopus suckers, thus expanding the set of genes that merit further functional characterisation in cephalopods. We therefore selected 38 orthologues in Caenorhabditis elegans, a tractable experimental platform and tested loss of function mutant strains of distinct functional gene classes (e.g., osm-9, egl-3, frpr-3) in a low pH avoidance paradigm. This identified 18 nociceptive-related genes to be prioritised for further functional characterisation in O. vulgaris.

neuroscience↗

bioRxiv2025

A BRC1-modulated switch in auxin transport accounts for the competition between Arabidopsis axillary buds

As part of their modular development, plants continuously adapt their shoot branching architecture according to environmental conditions. This occurs by regulating the activity of axillary buds established in each leaf axil. Whether a bud grows into a shoot depends partly on the presence of other active shoots, which can inhibit bud activation. This systemic coordination is proposed to be mediated by the transport network of the plant hormone auxin, with buds competing to establish sustained transport of auxin, termed canalised auxin transport, into the main stem. A second hormone, strigolactone, tunes this competition by influencing the removal of the PIN1 auxin export protein from the plasma membrane, and hence the dynamics of canalisation. Strigolactone also regulates the expression of another key regulatory hub, the bud-expressed transcription factor BRANCHED1 (BRC1). The interplay between auxin transport and BRC1 in regulating bud activity is poorly understood. Here, we investigate this interplay in the context of competition between buds, using Arabidopsis explants with two axillary buds as a minimal system. Using experimental data, we develop a mathematical model of bud-bud competition in which BRC1 influences the establishment of canalised auxin transport by regulating the basal rate of auxin efflux in buds. We identify single model parameters that plausibly correspond to the dual impact of strigolactone on BRC1 expression and PIN1. We show that modulating these two parameters reproduces the dynamics of bud growth and bud-bud competition observed in relevant mutants and treatments. Our model produces testable hypotheses, which we validate by generating a chimeric PIN1 auxin transporter with impaired strigolactone sensitivity, helping us uncouple the effects of strigolactone on PIN1 and BRC1. These results support the hypothesis that BRC1 influences local bud competitiveness by tuning the basal rate of auxin efflux in buds. Together with the systemic feedbacks in the auxin transport network, this enables plants to adjust dynamically the number and location of growing branches.

plant biology↗

bioRxiv2023

Inhibition of serotonin biosynthesis in neuroendocrine neoplasm suppressestumor growth in vivo

Small bowel neuroendocrine tumors (SBNETs) originate from enterochromaffin cells in the intestine which synthesize and secrete serotonin. SBNETs express high levels of tryptophan hydroxylase 1 (Tph1), a key enzyme in serotonin biosynthesis. Patients with high serotonin level may develop carcinoid syndrome, which can be treated with somatostatin analogues and the Tph1 inhibitor telotristat ethyl in severe cases. Although the active drug telotristat can efficiently reduce serotonin levels, its effect on tumor growth is unclear. This study determined the effect of serotonin inhibition on tumor cell growth in vitro and in vivo. The levels of Tph1 in various neuroendocrine neoplasms (NENs) were determined and the biological effects of Tph1 inhibition in vitro and in vivo using genetic and pharmacologic approaches was tested. Gene and protein expression analyses were performed on patient tumors and cancer cell lines. shRNAs targeting TPH1 were used to create stable knockdown in BON cells. Control and knockdown lines were assessed for their growth rates in vitro and in vivo, angiogenesis potential, serotonin levels, endothelial cell tube formation, tumor weight, and tumor vascularity. TPH1 is highly expressed in SBNETs and many cancer types. TPH1 knockdown cells and telotristat treated cells showed similar growth rates as control cells in vitro. However, TPH1 knockdown cells formed smaller tumors in vivo and tumors were less vascularized. Although Tph1 inhibition with telotristat showed no effect on tumor cell growth in vitro, Tph1 inhibition reduced tumor formation in vivo. Serotonin inhibition in combination with other therapies is a promising new avenue for targeting metabolic vulnerabilities in NENs.

cancer biology↗

bioRxiv2021

Confounds of using the unc-58 selection marker highlights the importance of genotyping co-CRISPR genes

Multiple advances have been made to increase the efficiency of CRISPR/Cas9 editing using the model genetic organism Caenorhabditis elegans (C. elegans). Here we report on the use of co-CRISPR marker genes: worms in which co-CRISPR events have occurred have overt, visible phenotypes which facilitates the selection of worms that harbour CRISPR events in the target gene. Mutation in the co-CRISPR gene is then removed by outcrossing to wild type but this can be challenging if the CRISPR and co-CRISPR gene are hard to segregate. However, outcrossing can be avoided by selecting worms of wild type appearance from a jackpot brood. These are broods in which a high proportion of the progeny of a single injected worm display the co-CRISPR phenotype suggesting high CRISPR efficiency. This can deliver worms that harbour the desired mutation in the target gene locus without the co-CRISPR mutation. We have successfully generated a discrete mutation in the C. elegans nlg-1 gene using this method. However, in the process of sequencing to authenticate editing in the nlg-1 gene we discovered genomic rearrangements that arise at the co-CRISPR gene unc-58 that by visual observation were phenotypically silent but nonetheless resulted in a significant reduction in motility scored by thrashing behaviour. This highlights that careful consideration of the hidden consequences of co-CRISPR mediated genetic changes should be taken before downstream analysis of gene function. Given this, we suggest sequencing of co-CRISPR genes following CRISPR procedures that utilise phenotypic selection as part of the pipeline.

genetics↗

bioRxiv2020

Investigating autism associated genes in C. elegans reveals candidates with a role in social behaviour

Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterised by a triad of behavioural impairments and includes disruption in social behaviour. ASD has a clear genetic underpinning and hundreds of genes are implicated in its aetiology. However, how single penetrant genes disrupt activity of neural circuits which lead to affected behaviours is only beginning to be understood and less is known about how low penetrant genes interact to disrupt emergent behaviours. Investigations are well served by experimental approaches that allow tractable investigation of the underpinning genetic basis of circuits that control behaviours that operate in the biological domains that are neuro-atypical in autism. The model organism C. elegans provides an experimental platform to investigate the effect of genetic mutations on behavioural outputs including those that impact social biology. Here we use progeny-derived social cues that modulate C. elegans food leaving to assay genetic determinants of social behaviour. We used the SAFRI Gene database to identify C. elegans orthologues of human ASD associated genes. We identified a number of mutants that displayed selective deficits in response to progeny. The genetic determinants of this complex social behaviour highlight the important contribution of synaptopathy and implicates genes within cell signalling, epigenetics and phospholipid metabolism functional domains. The approach overlaps with a growing number of studies that investigate potential molecular determinants of autism in C. elegans. However, our use of a complex, sensory integrative, emergent behaviour provides routes to enrich new or underexplored biology with the identification of novel candidate genes with a definable role in social behaviour.

animal behavior and cognition↗

bioRxiv2020

PAG1 directs SRC-family kinase intracellular localization to mediate receptor tyrosine kinase-induced differentiation

All receptor tyrosine kinases (RTKs) activate similar downstream signaling pathways through a common set of effectors, yet it is not fully understood how different receptors elicit distinct cellular responses to cause cell proliferation, differentiation, or other cell fates. We tested the hypothesis that regulation of SRC Family Kinase (SFK) signaling by the scaffold protein, PAG1, influences cell fate decisions following RTK activation. We generated a neuroblastoma cell line expressing a PAG1 fragment that lacks the membrane spanning domain (PAG1-) and localized to the cytoplasm. PAG1- cells exhibited higher amounts of active SFKs and increased growth rate. PAG1- cells were unresponsive to TRKA and RET signaling, two RTKs that induce neuronal differentiation, but retained responses to EGFR and KIT. Under differentiation conditions, PAG1- cells continued to proliferate and did not extend neurites or increase {beta}-III tubulin expression. FYN and LYN were sequestered in multivesicular bodies (MVBs), and dramatically more FYN and LYN were in the lumen of MVBs in PAG1- cells. In particular, activated FYN was sequestered in PAG1- cells, suggesting that disruption of FYN localization led to the observed defects in differentiation. The results demonstrate that PAG1 directs SFK intracellular localization to control activity and to mediate signaling by RTKs that induce neuronal differentiation.

cell biology↗

bioRxiv2020

Neuroligin dependence of social behaviour in C. elegans provides a model to investigate an autism associated gene

Autism spectrum disorder (ASD) is characterised by a triad of behavioural impairments including social behaviour. Neuroligin, a trans-synaptic adhesion molecule, has emerged as a penetrant genetic determinant of behavioural traits that signature the neuroatypical behaviours of autism. However, the function of neuroligin in social circuitry and the impact of genetic variation to this gene is not fully understood. Indeed, in animal studies designed to model autism there remains controversy regarding the role of neuroligin dysfunction in the expression of disrupted social behaviours. The model organism, C. elegans, offers an informative experimental platform to investigate the impact of genetic variants on social behaviour. In a number of paradigms it has been shown that inter-organismal communication by chemical cues regulates C. elegans social behaviour. We utilise this social behaviour to investigate the effect of autism associated genetic variants within the social domain of the research domain criteria. We have identified neuroligin as an important regulator of social behaviour and segregate the importance of this gene to the recognition and/or processing of social cues. We also use CRISPR/Cas9 to edit an R-C mutation that mimics a highly penetrant human mutation associated with autism. C. elegans carrying this mutation phenocopy the behavioural dysfunction of a C. elegans neuroligin null mutant, thus confirming its significance in the regulation of animal social biology. This highlights that quantitative behaviour and precision genetic intervention can be used to manipulate discrete social circuits of the worm to provide further insight to complex social behaviour.

neuroscience↗

bioRxiv2019

Pseudogenization, genome streamlining and specific gene repertoire landmark the genomes of Carnobacterium maltaromaticum isolated from diseased sharks

Carnobacterium maltaromaticum is a well-known pathogen of bony fish. More recently, C. maltaromaticum have been isolated from the brain and inner ear of disorientated and stranded common thresher (Alopias vulpinus) and salmon shark (Lamna ditropis). While thresher shark strandings are recent, salmon sharks have been stranding for decades, suggesting a long-term association between C. maltaromaticum and sharks. Interestingly, some strains of C. maltaromaticum are used by the food industry for their probiotic and antimicrobial activity. Here, we sequenced the genome of 9 C. maltaromaticum strains (SK-isolates) from diseased common thresher and salmon sharks and compared them to other C. maltaromaticum strains in order to identify the genomic signatures that differentiate the disease-associated from the innocuous C. maltaromaticum isolates. SK strains formed a monophyletic clade, with a conserved gene repertoire, and shared a high degree of pseudogenization even though isolates were from different shark species, locations, and across years. In addition, these strains displayed few virulence associated genes and unique genomic regions, some resulting from horizontal gene transfer. The association of diseased sharks and SK strains suggests their role as potential pathogens. Although the high degree of pseudogenization suggests a transition to a host-adapted lifestyle, a set of conserved functional genes highlights the need of essential functions required for a host-independent life style. Globally, this work identifies specific genomic signatures of C. maltaromaticum strains isolated from infected sharks, provides the framework to elucidate the role of SK strains in the development of the disease in sharks, and further investigate the dissemination of SK strains in populations of wild fish.

genomics↗

bioRxiv2018

Neuroligin dependence of pharyngeal pumping reveals an extrapharyngeal modulation of Caenorhabditis elegans feeding.

The integration of distinct sensory modalities is essential for behavioural decision making. In C. elegans this process is coordinated by neural circuits that integrate sensory cues from the environment to generate an appropriate behaviour at the appropriate output muscles. Food is a multimodal cue that impacts on the microcircuits to modulating feeding and foraging drivers at the level of the pharyngeal and body wall muscle respectively. When food triggers an upregulation in pharyngeal pumping it allows the effective ingestion of food. Here we show that a C. elegans mutant in the single orthologous gene of human neuroligins, nlg-1 are defective in food induced pumping. This is not explained by an inability to sense food, as nlg-1 mutants are not defective in chemotaxis towards bacteria. In addition, we show that neuroligin is widely expressed in the nervous system including AIY, ADE, ALA, URX and HSN neurones. Interestingly, despite the deficit in pharyngeal pumping neuroligin is not expressed within the pharyngeal neuromuscular network, which suggests an extrapharyngeal regulation of this circuit. We resolve electrophysiologically the neuroligin contribution to the pharyngeal circuit by mimicking a food-dependent pumping, and show that the nlg-1 phenotype is similar to mutants impaired in GABAergic and/or glutamatergic signalling. We suggest that neuroligin organizes extrapharyngeal circuits that regulate the pharynx. These observations based on the molecular and cellular determinants of feeding are consistent with the emerging role of neuroligin in discretely impacting functional circuits underpinning complex behaviours.

neuroscience↗