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Biology subjects

Digman, M. A.

Publications and source records attributed to Digman, M. A..

9 recordsLinked to original sources

An open, integrated platform for multiplexed bioluminescence microscopy

We report an imaging package to democratize all-in-one bioluminescence and fluorescence microscopy. The platform comprises three tools: PhasorViewer, a visualization suite to design experiments and identify optimal probe combinations; PhasorScope, an open-source, cost-effective microscopy framework to upgrade conventional microscopes; and PhasorAnalysis, a dedicated, user-friendly analysis pipeline to quantify phasor imaging data. We demonstrate the utility of the platform for multiplexed, simultaneous fluorescence and bioluminescence imaging with readily accessible optical reporters.

bioengineering↗

AD-genes and Aging Increase Count and Size of Lipid Droplets, Accompanied by Accumulation of Neutral Lipids Across Compartments in Hippocampal Neurons.

Lipid homeostasis plays a crucial role in neuronal function, yet its dynamics during aging and neurodegenerative diseases remain poorly understood. Our study unveils critical age-related changes in lipid polarity and lipid droplet characteristics in hippocampal neurons from non-transgenic (NTg) mice and from an Alzheimers disease-model (3xTg-AD). Using advanced spectral imaging and phasor analysis techniques, we tracked lipid polarity with Nile Red in vitro across various cellular compartments and quantified lipid droplet features. We discovered that NTg neurons exhibit a progressive increase in global lipid polarity from young to middle age, followed by a slight decrease in old age. This pattern suggests that neurons actively regulate their lipid composition throughout the lifespan, potentially in response to changing cellular needs. In contrast, AD-like (or 3xTg-AD) neurons fail to show this age-related increase in lipid polarity, instead displaying a consistent reduction in lipid polarity across all ages. Lipid droplet analysis revealed a transient accumulation of larger droplets in middle-aged NTg neurons, while AD-transgenic neurons showed early and persistent increases in lipid droplet size and number. Principal component analysis uncovered coordinated changes in lipid polarity and droplet characteristics, highlighting distinct patterns of lipid partitioning in NTg and AD-affected neurons. These findings suggest that AD-associated genetic modifications disrupt normal age-related adaptations in lipid metabolism and organization. Our results provide new insights into the complex interplay between lipid homeostasis, aging, and AD-genotypic stress. Understanding these dynamics may open new avenues for developing therapeutic strategies to maintain neuronal health and potentially slow AD progression.

biophysics↗

Monitoring macrophage polarization with gene expression reporters and bioluminescence phasor analysis

Macrophages exhibit a spectrum of behaviors upon activation and are generally classified as one of two types: inflammatory (M1) or anti-inflammatory (M2). Tracking these phenotypes in living cells can provide insight into immune function, but remains a challenging pursuit. Existing methods are mostly limited to static readouts or difficult to employ for multiplexed imaging in complex 3D environments while maintaining cellular resolution. We aimed to fill this void using bioluminescent technologies. Here we report genetically engineered luciferase reporters for long-term monitoring of macrophage polarization via spectral phasor analysis. M1- and M2-specific promoters were used to drive the expression of bioluminescent enzymes in macrophage cell lines. The readouts were multiplexed and discernable in both 2D and 3D formats with single cell resolution in living samples. Collectively, this work expands the toolbox of methods for monitoring macrophage polarization and provides a blueprint for monitoring other multifaceted networks in heterogeneous environments.

bioengineering↗

Multimodal Phasor Approach to study breast cancer cells invasion in 3D spheroid model

We implemented a multimodal set of functional imaging techniques optimized for deep-tissue imaging to investigate how cancer cells invade surrounding tissues and how their physiological properties change in the process. As a model for cancer invasion of the extracellular matrix, we created 3D spheroids from triple-negative breast cancer cells (MDA-MB-231) and non-tumorigenic breast epithelial cells (MCF-10A). We analyzed multiple hallmarks of cancer within the same spheroid by combining a number of imaging techniques, such as metabolic imaging of NADH by Fluorescence Lifetime Imaging Microscopy (NADH-FLIM), hyperspectral imaging of a solvatochromic lipophilic dye (Nile Red) and extracellular matrix imaging by Second Harmonic Generation (SHG). We included phasor-based bioimage analysis of spheroids at three different time points, tracking both morphological and biological properties, including cellular metabolism, fatty acids storage, and collagen organization. Employing this multimodal deep-imaging framework, we observed and quantified cancer cell plasticity in response to changes in the environment composition.

cancer biology↗

Microenvironmental Stiffness Induces Metabolic Reprogramming in Glioblastoma

The mechanical properties of solid tumors influence tumor cell phenotype and ability to invade into surrounding tissues. Using bioengineered scaffolds to provide a matrix microenvironment for patient-derived glioblastoma (GBM) spheroids, this study demonstrates that a soft, brain-like matrix induces GBM cells to shift to a glycolysis-weighted metabolic state which supports invasive behavior. We first show that orthotopic murine GBM tumors are stiffer than peri-tumoral brain tissues, but tumor stiffness is heterogenous where tumor edges are softer than the tumor core. Then, we developed three-dimensional scaffolds with {micro}-compressive moduli resembling either stiffer, tumor core or softer, peri-tumoral brain tissue. We demonstrate that the softer matrix microenvironment induces a shift in GBM cell metabolism toward glycolysis which manifests in lower proliferation rate and increased migration activities. Finally, we show that these mechanical cues are transduced from the matrix via CD44 and integrin receptors to induce metabolic and phenotypic changes in cancer cells.

cancer biology↗

Fluorescence Lifetime: Beating the IRF and interpulse window

Fluorescence lifetime imaging (FLIM) has been essential in capturing spatial distributions of chemical species across cellular environments employing pulsed illumination confocal setups. However, quantitative interpretation of lifetime data continues to face critical challenges. For instance, fluorescent species with known in vitro excited state lifetimes may split into multiple species with unique lifetimes when introduced into complex living environments. What is more, mixtures of species, that may be both endogenous and introduced into the sample, may exhibit; 1) very similar lifetimes; as well as 2) wide ranges of lifetimes including lifetimes shorter than the instrumental response function (IRF) or whose duration may be long enough to be comparable to the interpulse window. By contrast, existing methods of analysis are optimized for well-separated and intermediate lifetimes. Here we broaden the applicability of fluorescence lifetime analysis by simultaneously treating unknown mixtures of arbitrary lifetimes- outside the intermediate, goldilocks, zone-for data drawn from a single confocal spot leveraging the tools of Bayesian nonparametrics (BNP). We benchmark our algorithm, termed BNP-lifetime analysis of BNP-LA, using a range of synthetic and experimental data. Moreover, we show that the BNP-LA method can distinguish and deduce lifetimes using photon counts as small as 500.

biophysics↗

Patient-derived xenograft culture-transplant system for investigation of human breast cancer metastasis

Metastasis is a fatal disease where research progress has been hindered by a lack of authentic experimental models. Here, we develop a 3D tumor sphere culture-transplant system that facilitates the expansion and engineering of patient-derived xenograft (PDX) tumor cells for functional metastasis assays in vivo. Orthotopic transplantation and RNA sequencing analyses show that PDX tumor spheres maintain tumorigenic potential, and the molecular marker and global transcriptome signatures of native tumor cells. Tumor spheres display robust capacity for lentiviral engineering and dissemination in spontaneous and experimental metastasis assays in vivo. Inhibition of pathways previously reported to attenuate metastasis also inhibit metastasis after sphere culture, validating our approach for authentic investigations of metastasis. Finally, we demonstrate a new role for the metabolic enzyme NME1 in promoting breast cancer metastasis, providing proof-of-principle that our culture-transplant system can be used for authentic propagation and engineering of patient tumor cells for functional studies of metastasis.

cancer biology↗

Collagen stiffness modulates MDA-MB231 cell metabolism through adhesion-mediated contractility

O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=148 SRC=\"FIGDIR/small/272948_fig1A.gif\" ALT=\"Figure 1A\">\nView larger version (39K):\norg.highwire.dtl.DTLVardef@1529bb0org.highwire.dtl.DTLVardef@6b656borg.highwire.dtl.DTLVardef@cf7c05org.highwire.dtl.DTLVardef@1d76412_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOAbstract Figure:C_FLOATNO Increasing collagen stiffness causes a shift in highly invasive MDA-MB231 cancer cells from glycolysis to oxidative phosphorylation. Glioma U251MG cells show an opposite trend and MCF10A non-tumorigenic cells have little change in metabolism signatures in response to substrates stiffness.\n\nC_FIG

cancer biology↗

Restoring p53 Function and Silencing REV3L Suppresses the Cancerous Metabolic Phenotype in Cisplatin Treated Human Non-Small Lung Carcinoma Cells

Lung cancer is one of the deadliest cancers in the world accounting for over one-quarter of all cancer-related deaths, but in many cases, the cancer can develop a resistance to the cisplatin-based chemotherapies. It is well known that cancer cells exhibit the Warburg effect and some studies have suggested that cancer cell metabolism may be linked to cisplatin resistance. In this study, the effects of tumor suppressor protein p53 and translesional synthesis protein REV3L are studied to relate DNA damage signaling and repair to cellular metabolism by using the fluorescence lifetime of the metabolic coenzyme NADH. It was found that simultaneously restoring function to p53 and silencing REV3L suppressed the cancerous metabolic phenotype and resulted in the greatest amount of cancer cell death. This study demonstrates a previously unrecognized relationship between p53 and REV3L in cellular metabolism and may lead to improvements in chemotherapy treatment plans that reduce cisplatin resistance in cancer cells.

cancer biology↗