Biology subjects

Denfield, G. H.

Publications and source records attributed to Denfield, G. H..

3 recordsLinked to original sources

bioRxiv2019

Learning Divisive Normalization in Primary Visual Cortex

Divisive normalization (DN) is a prominent computational building block in the brain that has been proposed as a canonical cortical operation. Numerous experimental studies have verified its importance for capturing nonlinear neural response properties to simple, artificial stimuli, and computational studies suggest that DN is also an important component for processing natural stimuli. However, we lack quantitative models of DN that are directly informed by measurements of spiking responses in the brain and applicable to arbitrary stimuli. Here, we propose a DN model that is applicable to arbitrary input images. We test its ability to predict how neurons in macaque primary visual cortex (V1) respond to natural images, with a focus on nonlinear response properties within the classical receptive field. Our model consists of one layer of subunits followed by learned orientation-specific DN. It outperforms linear-nonlinear and wavelet-based feature representations and makes a significant step towards the performance of state-of-the-art convolutional neural network (CNN) models. Unlike deep CNNs, our compact DN model offers a direct interpretation of the nature of normalization. By inspecting the learned normalization pool of our model, we gained insights into a long-standing question about the tuning properties of DN that update the current textbook description: we found that within the receptive field oriented features were normalized preferentially by features with similar orientation rather than non-specifically as currently assumed. Author summaryDivisive normalization (DN) is a computational building block throughout sensory processing in the brain. We currently lack an understanding of what role this normalization mechanism plays when processing complex stimuli like natural images. Here, we use modern machine learning methods to build a general DN model that is directly informed by data from primary visual cortex (V1). Contrary to high-predictive deep learning models, our DN-based models parameters offer a straightforward interpretation of the nature of normalization. Within the receptive field, we found that neurons responding strongly to a specific orientation are preferentially normalized by other neurons that are highly active for similar orientations, rather than being normalized by all neurons as it is currently assumed by textbook models.

neuroscience↗

bioRxiv2017

Deep convolutional models improve predictions of macaque V1 responses to natural images

Despite great efforts over several decades, our best models of primary visual cortex (V1) still predict spiking activity quite poorly when probed with natural stimuli, highlighting our limited understanding of the nonlinear computations in V1. Recently, two approaches based on deep learning have been successfully applied to neural data: On the one hand, transfer learning from networks trained on object recognition worked remarkably well for predicting neural responses in higher areas of the primate ventral stream, but has not yet been used to model spiking activity in early stages such as V1. On the other hand, data-driven models have been used to predict neural responses in the early visual system (retina and V1) of mice, but not primates. Here, we test the ability of both approaches to predict spiking activity in response to natural images in V1 of awake monkeys. Even though V1 is rather at an early to intermediate stage of the visual system, we found that the transfer learning approach performed similarly well to the data-driven approach and both outperformed classical linear-nonlinear and wavelet-based feature representations that build on existing theories of V1. Notably, transfer learning using a pre-trained feature space required substantially less experimental time to achieve the same performance. In conclusion, multi-layer convolutional neural networks (CNNs) set the new state of the art for predicting neural responses to natural images in primate V1 and deep features learned for object recognition are better explanations for V1 computation than all previous filter bank theories. This finding strengthens the necessity of V1 models that are multiple nonlinearities away from the image domain and it supports the idea of explaining early visual cortex based on high-level functional goals.\n\nAuthor summaryPredicting the responses of sensory neurons to arbitrary natural stimuli is of major importance for understanding their function. Arguably the most studied cortical area is primary visual cortex (V1), where many models have been developed to explain its function. However, the most successful models built on neurophysiologists intuitions still fail to account for spiking responses to natural images. Here, we model spiking activity in primary visual cortex (V1) of monkeys using deep convolutional neural networks (CNNs), which have been successful in computer vision. We both trained CNNs directly to fit the data, and used CNNs trained to solve a high-level task (object categorization). With these approaches, we are able to outperform previous models and improve the state of the art in predicting the responses of early visual neurons to natural images. Our results have two important implications. First, since V1 is the result of several nonlinear stages, it should be modeled as such. Second, functional models of entire visual pathways, of which V1 is an early stage, do not only account for higher areas of such pathways, but also provide useful representations for V1 predictions.

neuroscience↗

bioRxiv2017

Attentional fluctuations induce shared variability in macaque primary visual cortex

Variability in neuronal responses to identical stimuli is frequently correlated across a population. Attention is thought to reduce these correlations by suppressing noisy inputs shared by the population. However, even with precise control of the visual stimulus, the subjects attentional state varies across trials. While these state fluctuations are bound to induce some degree of correlated variability, it is currently unknown how strong their effect is, as previous studies generally do not dissociate changes in attentional strength from changes in attentional state variability. We designed a novel paradigm that does so and find both a pronounced effect of attentional fluctuations on correlated variability at long timescales and attention-dependent reductions in correlations at short timescales. These effects predominate in layers 2/3, as expected from a feedback signal such as attention. Thus, significant portions of correlated variability can be attributed to fluctuations in internally generated signals, like attention, rather than noise.

neuroscience↗