Search bioRxiv⌕ Search

Biology subjects

Delord, K.

Publications and source records attributed to Delord, K..

7 recordsLinked to original sources

From vehicles to wildlife: transferable deep learning for trajectory generation

Realistic simulation of animal movement is fundamental to conservation, habitat modeling, and ecological scenario evaluation. Traditional approaches struggle to capture multi-scale trajectory dynamics, while generative deep learning for complete trajectory simulation remains largely unexplored in ecology due to data scarcity. We show that a diffusion model pre-trained on millions of vehicle GPS trajectories can be fine-tuned on hundreds of seabird central-place foraging trips to simultaneously generate ecologically realistic trajectories for five species and six breeding colonies. The fine-tuned model consistently outperforms four state-of-the-art baselines (GAN, VAE, HMM, iSSF) across movement metrics spanning step dynamics, spatial distribution, and behavioral temporality, with comparable or shorter computation times. Domain transfer reaches full performance in 35 minutes versus 7 hours from scratch, and conditioning on species and colony enables generalization to unseen combinations from as few as 10 trajectories. These results establish cross-domain transfer learning as a new paradigm for data-efficient generative animal movement modeling.

bioinformatics↗

Linking differences in personality to demography in the wandering albatross

Population dynamics are shaped by individual differences. With a good understanding of the relationships between individual differences and vital rates, population models can be improved to yield more realistic and detailed demographic projections. Personality, i.e., consistent individual differences in behaviour, is expected to shape individual differences in performance. Yet, an empirical quantification of its impact on population dynamics is currently lacking. Here, we developed and analysed a three-dimensional hyperstate population model that accounts for three sources of individual differences simultaneously in its structure: age, breeding state and boldness as a measure of personality. We parameterized our model using empirical demographic and boldness data on the wandering albatross (Diomedea exulans) population from the Crozet archipelago. We conducted sensitivity analyses to quantify the relative importance of boldness. We then simulated scenarios of increased strength of relationship between boldness and three vital rates (survival, breeding probability and breeding success) to explore conditions under which shifts in boldness distribution could be observed in the future. We showed that the sensitivity of population growth rate to changes in vital rates followed the normal distribution of boldness within the population. Indeed, population growth rate was much less sensitive to changes in the vital rates of extreme shy or bold individuals, compared to that of individuals of intermediate boldness. Overall, sensitivity of population growth rate was greater for survival than reproductive rates across all three dimensions. Our simulations showed that increasing the strength of the relationship between boldness and survival would yield the greatest shift in boldness distribution over time compared to breeding probability and breeding success. However, shifts in boldness distribution appeared constrained by the low heritability (< 0.2) value and the large variance in boldness in this population. Our study provides an important contribution to our understanding of the role of personality in shaping the population dynamics of wild species. In the face of global change, our approach offers a promising avenue to predict the potential for behavioral adaptation. More generally, our approach may help to unravel the complex interplay between individual variations in any (or many) traits and population dynamics.

ecology↗

Fine-scale behaviour and population estimates suggest low exposure but do not exclude high sensitivity to bycatch for Endangered sooty albatrosses

Recent developments in assessing species-specific seabird bycatch risks demonstrated that fine-scale approaches are essential tools to quantify interactions with fishing vessels and understand attraction and attendance behaviours. Matching boats movements with birds tracking data specifically allows to investigate seabird-fishery interaction for cryptic species for which on-board information is critically lacking. The sooty albatross (Phoebetria fusca) overlaps with fisheries throughout its range and is known to be vulnerable to incidental bycatch. Combining GPS and behaviour data from individuals from Crozet Islands and boat locations during the incubation period, we investigated interactions of sooty albatrosses with fisheries in the southern Indian Ocean. Individuals foraged mostly in sub-tropical international waters, where they only encountered a small number of boats. The low interaction rate during this period may suggests that sooty albatrosses are not strongly attracted towards fishing vessels. However, this result should be interpreted with caution due to the low sample size and fishing effort during the study period, as these observations may conceal a higher bycatch risk during intense fishing effort and/or energetically demanding periods. The species conservation status requires further data to be collected throughout the annual cycle to provide an accurate assessment of the threat.

ecology↗

The challenges of independence: ontogeny of at-sea behaviour in a long-lived seabird

The transition to independent foraging represents an important developmental stage in the life cycle of most vertebrate animals. Juveniles differ from adults in various life history traits and tend to survive less well than adults in most long-lived animals. Several hypotheses have been proposed to explain higher mortality including that of inadequate/inferior foraging skills compared to adults, young naive individuals combining lack of experience and physical immaturity. Thus a change in behaviour, resulting in an improvement of skills acquired from growing experience, is expected to occur during a period of learning through the immaturity phase. Very few studies have investigated the ontogeny of foraging behaviour over long periods of time, particularly in long-lived pelagic seabirds, due to the difficulty of obtaining individual tracking data over several years. We investigated the foraging behaviour, through activity patterns, during the three life stages of the endangered Amsterdam albatross by using miniaturized activity loggers on naive juveniles, immatures and adults. Naive juveniles during their first month at sea after leaving their colony exhibited lower foraging effort (greater proportion of time spent sitting on water, longer and more numerous bouts on water, shorter and fewer flying bouts). Patterns of activity parameters in juveniles after independence suggested a progressive change of foraging performances during the first two months after fledging. We found sex differences in activity parameters according to time since departure from the colony and month of the year, consistent with the important sexual dimorphism in the Amsterdam albatross. Regardless of life stage considered, activity parameters exhibited temporal variability reflecting the modulation of foraging behaviour. This variability is discussed in light of both extrinsic (i.e. environmental conditions such as variability in food resources or in wind) and intrinsic (i.e. energetic demands linked to plumage renew during moult) factors.

ecology↗

Multispecies integrated population model reveals bottom-up dynamics in a seabird predator-prey system

Assessing the effects of climate and interspecific relationships on communities is challenging because of the complex interplay between species population dynamics, their interactions, and the need to integrate information across several biological levels (individuals - populations - communities). Usually used to quantify species interactions, integrated population models (IPMs) have recently been extended to communities. These models allow fitting multispecies matrix models to data from multiple sources while simultaneously accounting for various sources of uncertainty in each data source. We used multispecies IPMs accommodating climate conditions to quantify the relative contribution of climate vs. interspecific interactions on demographic parameters, such as survival and breeding success, in the dynamics of a predator-prey system. We considered a stage-structured predator-prey system combining 22 years of capture-recapture data and population counts of two seabirds, the Brown Skua (Catharacta lonnbergi) and its main prey the Blue Petrel (Halobaena caerulea) both breeding on the Kerguelen Islands in the Southern Ocean. Our results showed that climate and predator-prey interactions drive the demography of skuas and petrels in different ways. The breeding success of skuas appeared to be largely driven by the number of petrels and to a lesser extent by intraspecific density-dependence. In contrast, there was no evidence of predation effects on the demographic parameters of petrels, which were affected by oceanographic factors (chlorophyll a and sea surface temperature anomalies). We conclude that bottom-up mechanisms are the main drivers of this skua-petrel system. We discuss the mechanisms by which climate variability and predator-prey relationships may affect the demographic parameters of these seabirds. Taking into account both species interactions and environmental covariates in the same analysis improved our understanding of species dynamics.

ecology↗

Exploring the infection dynamics of a bacterial pathogen on a remote oceanic island reveals annual epizootics impacting an albatross population

Oceanic islands with reduced species richness provide an opportunity to investigate the emergence, maintenance and transmission of infectious diseases threatening wildlife. On Amsterdam Island, in the southern Indian Ocean, massive and recurrent mortality of the nestlings of Indian yellow-nosed albatross (Thalassarche carteri) has been attributed to avian cholera caused by Pasteurella multocida, a bacterial pathogen of likely human introduction. To understand the annual dynamics of pathogen prevalence, we measured the shedding of bacterial DNA by the albatrosses during four successive breeding seasons. The screening of 583 bird swabs by Real-Time PCR revealed an intense circulation of P. multocida during each study year, with a steady increase of infection prevalence across the breeding season. In the three years of highest pathogen prevalence, the epizootics were associated with massive die-offs of nestlings, inducing low annual fledging success (< 20%). These findings and developed PCR protocol have crucial applications for refining wildlife conservation plans aiming at controlling this disease.

ecology↗

Sexual segregation in a highly pagophilic and sexually dimorphic marine predator

AO_SCPLOWBSTRACTC_SCPLOWSexual segregation is common in many species and has been attributed to intra-specific competition, sex-specific differences in foraging efficiency or in activity budgets and habitat choice. However, very few studies have simultaneously quantified sex-specific foraging strategies, at sea distribution, habitat use, and trophic ecology. Moreover, these studies come from low latitude areas reflecting a lack of evidence for polar species. We investigated sexual segregation in snow petrels Pagodroma nivea and combined movement, foraging trip efficiency, stable isotope and oceanographic data to test whether sexual segregation results from sex-specific habitat use. Breeding birds foraging in the Dumont dUrville sea, Antarctica, were tracked during incubation. Some similarities between males and females foraging characteristics did not support the sexual segregation hypothesis. Indeed, space-use sharing and utilization distribution, {delta}13C values and foraging trip performances (trip duration, length, speed and directions, mass gain, proportion mass gain) were similar between males and females.. However, there was support for sexual segregation in foraging characteristics linked to foraging habitats. Females foraged less than males in areas with higher sea ice concentration (SIC >70%) and had lower {delta}15N values in plasma, blood cells and feathers. Foraging efficiency (proportionate daily mass gain while foraging), was greater for females than for males, and was greater for larger females with deeper bills. Females were more efficient than males during short (<2 days) foraging trips, and for females, but not for males, mass gain, proportion mass gain and body condition at return from a foraging trip were positively correlated to SIC of the foraging areas. Together, these results suggest an absence of sexual segregation at large spatial scales in snow petrels during incubation, but strongly support habitat segregation between high (>70%) more profitable SIC (males) and low SIC areas (females), probably driven by intraspecific competition. Therefore, male and female snow petrels segregate at small spatial scales mainly determined by habitat (SIC) characteristics.

ecology↗