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Biology subjects

Deliorman, M.

Publications and source records attributed to Deliorman, M..

2 recordsLinked to original sources

Softer substrates mechanical primes sustained and metabolically fit CD8+ T cells for anti-tumor activity

Adoptive T cell therapy for solid tumors is limited by poor persistence of CD8+ T cells, a dysfunction that is often programmed during ex vivo expansion. Here, we show that, when biochemical inputs are held constant,substrate mechanics alone can direct durable anti-tumor function in primary human CD8+ T cells. Using polyacrylamide (PA) hydrogels of defined stiffness (soft [~]1 kPa; stiff [~]55 kPa) in both flat and bead formats, we first establish that contact geometry dominates early activation, whereas substrate stiffness governs the 14-day expansion trajectory. Across the rapid expansion protocol, flat PA substrates sustain proliferation, limit PD-1/LAG-3 acquisition, and preserve a balanced effector-regulatory cytokine profile. In contrast, Dynabeads-expanded cells exhibit net cell loss and a more pronounced decline in cytokine output over time. To define the underlying programs, RNA-seq identifies a 125-gene biomimetic core shared by both PA conditions but absent from Dynabeads, encompassing proliferation, OXPHOS, mechanobiology, and a stem-like precursor (Tpex) signature. Consistent with these transcriptional differences, metabolic profiling shows that flat soft PA best preserves dual glycolytic and mitochondrial capacity at day 14, indicating enhanced bioenergetic flexibility. Functionally, PA-primed CD8+ T cells display superior cytotoxicity against MDA-MB-231 and MCF-7 breast cancer cells in both 2D and collagen-based 3D co-cultures, with this advantage maintained under matrix constraints that mimic solid tumor microenvironments. Together, these findings establish substrate mechanics as a tunable and functionally decisive design parameter for engineering durable, solid-tumor-effective CD8+ T cell products in preclinical in vitro models of solid tumors.

immunology↗

Nuclear βactin dependent chromatin accessibility governs stem cell pluripotency and extracellular matrix gene programs to maintain cellular biomechanics for cell lineage decisions

Pluripotency requires coordinated regulation of chromatin state, transcription and extracellular matrix (ECM) mechanics, but how these layers are integrated remains unclear. Here, using {beta}-actin knockout mouse embryonic stem cells (mESCs) and a nuclear-targeted {beta}-actin rescue, we identify nuclear {beta}-actin as a key regulator linking chromatin accessibility to mechanosensitive control of cell fate. {beta}-actin loss reduced OCT4, SOX2 and NANOG, broadly rewired the transcriptome and proteome and decreased accessibility at pluripotency regulatory regions. Integrated RNA-seq and ATAC-seq revealed coordinated dysregulation of stemness, ECM, mechanotransduction and early-lineage programs. These changes were accompanied by fibronectin and collagen upregulation, altered nuclear morphology, reduced Lamin A/C and mechanosensing proteins, increased nuclear YAP1 and greater ECM stiffness heterogeneity. Functionally, knockout cells displayed biased lineage specification, failed neuronal differentiation, ectopic cardiomyocyte-like differentiation, and markedly reduced teratoma growth with diminished ectodermal representation. Nuclear {beta}-actin re-expression restored many molecular, mechanical and differentiation defects, although chromatin rescue remained incomplete. Together, these findings establish nuclear {beta}-actin as an integrator of chromatin regulation and ECM-dependent mechanotransduction that preserves pluripotency and developmental competence.

cell biology↗