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De Luca, D.

Publications and source records attributed to De Luca, D..

2 recordsLinked to original sources

Deep generative networks reveal the tuning of neurons in IT and predict their influence on visual perception

Finding the tuning of visual neurons has kept neuroscientists busy for decades. One approach to this problem has been to test specific hypotheses on the relevance of a visual property (e.g. orientation or color), build a set of "artificial" stimuli that vary along that property and then record neural responses to those stimuli. Here, we present a complementary, data-driven method to retrieve the tuning properties of visual neurons. Exploiting deep generative networks and electrophysiology in monkeys, we first used a method to reconstruct any stimulus from its evoked neuronal activity in the inferotemporal cortex (IT). Then, by arbitrarily perturbing the response of individual cortical sites in the model, we generated naturalistic and interpretable sequences of images that strongly influence neural activity of that site. This method enables the discovery of previously unknown tuning properties of high-level visual neurons that are easily interpretable, which we tested with carefully controlled stimuli. When we knew which images drove the neurons, we activated the cells with electrical microstimulation and observed a predicable shift of the monkey perception in the direction of the preferred image. By allowing the brain to tell us what it cares about, we are no longer limited by our experimental imagination.

neuroscience↗

FungAMR: A comprehensive portrait of antimicrobial resistance mutations in fungi

Antimicrobial resistance (AMR) is a global threat. To optimize the use of our antifungal arsenal, we need rapid detection and monitoring tools that rely on high-quality AMR mutation data. Here, we performed a thorough manual curation of published AMR mutations in fungal pathogens to produce the FungAMR reference dataset. A total of 501 papers were curated, leading to 35,792 mutation entries all classified with the degree of evidence that supports their role in resistance. FungAMR covers 95 species, 246 genes and 208 drugs. We combined variant effect predictors with FungAMR resistance mutations and showed that these tools could be used to help predict the potential impact of mutations on AMR. Additionally, a comparative analysis among species revealed a high level of convergence in the molecular basis of resistance, highlighting some potentially universal resistance mutations. The analysis also showed that a significant number of resistance mutations lead to cross-resistance within antifungals of a class, as well as between classes for certain mutated genes. The acquisition of fungal resistance in the clinic and the field is an urging concern. Finally, we provide a computational tool, ChroQueTas, that leverages FungAMR to screen fungal genomes for AMR mutations. These resources are anticipated to have great utility for researchers in the fight against antifungal resistance.

microbiology↗