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Biology subjects

Davidov, K.

Publications and source records attributed to Davidov, K..

3 recordsLinked to original sources

Differential colonization and succession dynamics of marine bacteria on different plastic polymers

During the past decades since plastic was introduced to the world, marine microorganisms have been adapted for life on marine plastic debris, forming unique plastic-attached microbial communities. To date, little is known about the colonization and succession processes that take place on plastic surfaces in marine environments and how the plastic polymer type affects the plastic-attached microbiome composition. To address this knowledge gap, we examined the colonization and succession dynamics of marine bacteria on four common plastic polymers - PE, PP, PS, and PET-compared to glass and wood in a controlled seawater system under different temperatures. Using a simple experimental design, coupled with a long-read 16S rRNA metabarcoding pipeline and a set of complementary data analyses, we characterized the temporal trends in the composition of the bacterial microbiome developed on different surfaces over 2 - 90 days. By applying weighted gene co-expression network (WGCNA) analysis, we established co-occurrence networks and identified genera with specific succession signatures, significant enrichment on specific plastic polymers and/or strong intra-genus connections. Among them, members of genus Alcanivorax were significantly enriched on either PE or PP plastic surfaces as early as 2 days post-inoculation. Alcanivorax colonization preference to polyolefins was confirmed in colonization assays with pure Alcanivorax strains. Our research approach presented here may contribute to understanding how plastisphere communities are being formed and help identify taxa with specific adaptations to plastic surfaces.

ecology↗

Characterization of novel fungal-algal symbiosis on LDPE plastic surfaces in the Mediterranean Sea

Plastic debris in the ocean serves as a stable ground for the formation of a complex ecosystem, termed plastisphere, which includes a variety of organisms from different taxonomic groups. Not much is known about the relationships between the organisms of the plastisphere communities. In this study we describe a novel symbiotic relationship between a marine fungus and several species of diatoms on plastic surfaces that were submerged in the water of a Mediterranean Sea marina in Israel. Scanning electron microscope images of the surfaces revealed a network of fungal hyphae with multiple diatom cells attached to them via the side or the tip of their body. Using DNA metabarcoding for the fungal Internal Transcribed Spacer (ITS) barcode locus, we found that the symbiotic fungus belongs to the phylum Ascomycota, and that it is more abundant on low density polyethylene (LDPE) surfaces compared to other plastic polymers and glass. We hypothesize that the observed symbiotic relationship may have mutual benefits for both parties, including surface-anchoring for the diatoms and nutritional benefits for the fungus, that reflects a recent adaptation for life on floating plastic debris.

microbiology↗

High-resolution screening for marine prokaryotic and eukaryotic taxa with selective preference for PE and PET surfaces

Marine plastic debris serve as substrates for the colonization of a variety of prokaryote and eukaryote organisms. Of particular interest are the microorganisms that have adapted to thrive on plastic as they may contain genes, enzymes or pathways involved in the colonization or metabolism of plastics. We implemented DNA metabarcoding with nanopore MinION sequencing to compare the one-month-old biomes of hydrolysable (polyethylene terephthalate) and non-hydrolysable (polyethylene) plastics surfaces vs. those of glass and the surrounding water in a Mediterranean Sea marina. We sequenced longer 16S rRNA, 18S rRNA and ITS barcode loci for a more comprehensive taxonomic profiling of the bacterial, protist and fungal communities respectively. Long read sequencing enabled high-resolution mapping to genera and species. Using differential abundance screening we identified 32 bacteria and five eukaryotic species, that were differentially abundant on plastic compared to glass. This approach may be used in the future to characterize the plastisphere communities and to screen for microorganisms with a plastic-metabolism potential.

microbiology↗