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Biology subjects

David R. Nelson

Publications and source records attributed to David R. Nelson.

2 recordsLinked to original sources

Spatially-constrained growth enhances conversional meltdown

Cells that mutate or commit to a specialized function (differentiate) often undergo conversions that are effectively irreversible. Slowed growth of converted cells can act as a form of selection, balancing unidirectional conversion to maintain both cell types at a steady-state ratio. However, when one-way conversion is insuffciently counterbalanced by selection, the original cell type will ultimately be lost, often with negative impacts on the populations overall ftness. The critical balance between selection and conversion needed for preservation of unconverted cells and the steady-state ratio between cell types depends on the spatial circumstances under which cells proliferate. We present experimental data on a yeast strain engineered to undergo irreversible conversion: this synthetic system permits cell type-specifc fuorescent labeling and exogenous variation of the relative growth and conversion rates. We fnd that populations confned to grow on a fat agar surface are more susceptible than their well-mixed counterparts to ftness loss via a conversion-induced \"meltdown.\" We then present analytical predictions for growth in several biologically-relevant geometries - well-mixed liquid media, radially-expanding two-dimensional colonies, and linear fronts in two dimensions - by employing analogies to the directed percolation transition from non-equilibrium statistical physics. These simplifed theories are consistent with the experimental results.

Evolutionary Biology

How obstacles perturb population fronts and alter their genetic structure

As populations spread into new territory, environmental heterogeneities can shape the population front and genetic composition. We study here the effect of one important building block of inhomogeneous environments, compact obstacles. With a combination of experiments, theory, and simulation, we show how isolated obstacles both create long-lived distortions of the front shape and amplify the effect of genetic drift. A system of bacteriophage T7 spreading on a spatially heterogeneous Escherichia coli lawn serves as an experimental model system to study population expansions. Using an inkjet printer, we create well-defined replicates of the lawn and quantitatively study the population expansion manifested in plaque growth. The transient perturbations of the plaque boundary found in the experiments are well described by a model in which the front moves with constant speed. Independent of the precise details of the expansion, we show that obstacles create a kink in the front that persists over large distances and is insensitive to the details of the obstacle's shape. The small deviations between experimental findings and the predictions of the constant speed model can be understood with a more general reaction-diffusion model, which reduces to the constant speed model when the obstacle size is large compared to the front width. Using this framework, we demonstrate that frontier alleles that just graze the side of an isolated obstacle increase in abundance, a phenomenon we call 'geometry-enhanced genetic drift', complementary to the founder effect associated with spatial bottlenecks. Bacterial range expansions around nutrient-poor barriers and stochastic simulations confirm this prediction, the latter highlight as well the effect of the obstacle on the genealogy of individuals at the front. We argue that related ideas and experimental techniques are applicable to a wide variety of more complex environments, leading to a better understanding of how environmental heterogeneities affect population range expansions.

Evolutionary Biology