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Biology subjects

Curti, N.

Publications and source records attributed to Curti, N..

2 recordsLinked to original sources

Prediction of vascular ageing based on smartphone acquired PPG signals

Photoplethysmography (PPG) measured by smartphone has the potential for a large scale, non-invasive, and easy-to-use screening tool. Vascular aging is linked to increased arterial stiffness, which can be measured by PPG. We investigate the feasibility of using PPG to predict healthy vascular aging (HVA) based on two approaches: machine learning (ML) and deep learning (DL). We performed data preprocessing including detrending, demodulating and denoising on the raw PPG signals. For ML, ridge penalized regression has been applied to 38 features extracted from PPG, whereas for DL several convolutional neural networks (CNNs) have been applied to the whole PPG signals as input. The analysis has been conducted using the crowd-sourced Heart for Heart data. The prediction performance of ML using two features (AUC of 94.7%) - the a wave of the second derivative PPG and tpr, including four covariates, sex, height, weight, and smoking - was similar to that of the best performing CNN, 12-layer ResNet (AUC of 95.3%). Without having the heavy computational cost of DL, ML might be advantageous in finding potential biomarkers for HVA prediction. The whole workflow of the procedure is clearly described, and open software has been made available to facilitate replication of the results.

biophysics↗

DNetPRO: A network approach for low-dimensional signatures from high-throughput data

The objective of many high-throughput \"omics\" studies is to obtain a relatively low-dimensional set of observables - signature - for sample classification purposes (diagnosis, prognosis, stratification). We propose DNetPRO, Discriminant Analysis with Network PROcessing, a supervised signature identification method based on a bottom-up combinatorial approach that exploits the discriminant power of all variable pairs. The algorithm is easily scalable allowing efficient computing even for high number of observables (104 - 105). We show applications on real high-throughput genomic datasets in which our method outperforms existing results, or compares to them but with a smaller number of selected variables. Moreover the linearity of DNetPRO allows a clearer interpretation of the obtained signatures in comparison to non linear classification models

bioinformatics↗