Biology subjects

Cummings, D. A.

Publications and source records attributed to Cummings, D. A..

5 recordsLinked to original sources

bioRxiv2025

Comparison of oviposition and adult trapping to monitor wMel introgression for Wolbachia-based vector control

Wolbachia introgression into Aedes aegypti mosquito populations has been shown to be effective in preventing dengue and is being evaluated for WHO prequalification. Monitoring the long-term introgression of Wolbachia (wMel)-positive Aedes aegypti mosquitoes, however, requires labor-intensive and costly BG-Sentinel traps (BG-traps). More affordable alternatives, such as using oviposition traps (ovitraps), have not been fully evaluated. Ae. aegypti eggs and adults were collected from 124 ovitraps and 237 BG-traps, respectively, across 12 clusters in Belo Horizonte, Brazil from March to May 2023 as part of the EVITA Dengue trial. We used a qPCR assay to detect wMel in a sample of L3-L4 stage larvae (up to 29) that were reared from eggs in ovitraps and adults from BG-traps (up to 10 per BG-trap). We used mixed effects models to compare estimates of cluster-level wMel introgression from ovitrap and BG-trap data over time. Among 3,675 larvae reared from ovitraps, wMel prevalence was 0.50 (95% CI: 0.48-0.51). Among 1,244 adult Ae. aegypti tested from BG-traps, wMel prevalence was 0.45 (95% CI: 0.42-0.48). Cluster-level wMel introgression in larvae and adults was highly correlated (Spearmans r = 0.70, p = 6.71e-06). Multivariate analysis found that ovitrap estimates of introgression were associated with BG-trap estimates in the same month when models incorporated the previous months ovitrap wMel-positive count, the proportion of wMel in ovitraps in the current and previous month, and Ae. aegypti abundance. Leveraging this model, predicted wMel introgression from ovitrap data were highly correlated with observed introgression from BG-trap data (rs,counts=0.98, p=1.53e-14; rs,prevalences=0.82, p=0.11e-05) and provided greater precision than crude ovitrap-based estimates. These findings indicate that ovitrap-based monitoring represents a low cost, more efficient approach to evaluating introgression as the Wolbachia-based interventions are scaled up and implemented broadly in high burden regions for dengue and other arboviral diseases. Author SummaryDengue fever is a major global health burden, and one promising way to control it is by releasing Aedes aegypti mosquitoes infected with a bacteria called Wolbachia. This bacteria reduces the mosquitoes ability to spread dengue. However, monitoring the success of Wolbachia in mosquito populations over time requires expensive and labor-intensive traps. Our study explored a more affordable alternative: using oviposition traps (ovitraps), which collect mosquito eggs instead of adults. In Belo Horizonte, Brazil, we compared data from eggs collected in ovitraps with data from standard mosquito traps (BG-traps) that catch adult mosquitoes. By analyzing the mosquitoes for Wolbachia, we found that the egg-based method provided reliable estimates of Wolbachia levels in the mosquito population. These results suggest that ovitraps could be a cost-effective and efficient way to monitor Wolbachias spread. This approach could help improve dengue prevention efforts, making it easier for public health programs to track and expand this control strategy in areas where dengue is a major concern.

ecology↗

bioRxiv2022

A widespread methylotroph acyl-homoserine lactone synthase produces an atypical quorum sensing signal

Pink pigmented facultative methylotrophs of the genera Methylorubrum and Methylobacterium are omnipresent bacteria often found associated with plants. Despite their widespread occurrence, the molecular details of how these organisms interact with each other and their environment remain understudied. We analyzed genes encoding N-acylhomoserine lactone quorum sensing signal synthases in published genomes of these bacteria and determined that the product of the largest group of signal synthases had not been characterized. We subsequently identified this N-acylhomoserine lactone product using inverse stable isotopic labeling (InverSIL), which revealed an atypical signal. We then demonstrate in one representative strain that this signal activates its cognate LuxR-family transcription factor and is produced in a positive feedback loop. These results reveal a previously undescribed yet widespread signal used by pink pigmented facultative methylotrophs, which helps us understand the chemical ecology of these important bacteria.

microbiology↗

bioRxiv2021

Methylotroph Natural Product Identification by Inverse Stable Isotopic Labeling

Natural products are an essential source of bioactive compounds. Isotopic labeling is an effective way to identify natural products that incorporate a specific precursor; however, this approach is limited by the availability of isotopically-enriched precursors. We used an inverse stable isotopic labeling approach to identify natural products by growing bacteria on a 13C-carbon source and then identifying 12C-precursor incorporation by mass spectrometry. We applied this approach to methylotrophs, ecologically important bacteria predicted to have significant yet underexplored biosynthetic potential. We demonstrate this method identifies N-acyl homoserine lactone quorum sensing signals produced by diverse methylotrophs grown on three different one-carbon compounds. We then apply this approach to simultaneously identify five uncharacterized signals produced by a methylotroph, and link these compounds to their synthases. We envision that this method can be used to identify other natural product classes synthesized by methylotrophs and other organisms that grow on relatively inexpensive 13C-carbon sources.

biochemistry↗

bioRxiv2021

GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser

Access to web-based platforms has enabled scientists to perform research remotely. A critical aspect of mass spectrometry data analysis is the inspection, analysis, and visualization of the raw data to validate data quality and confirm statistical observations. We developed the GNPS Dashboard, a web-based data visualization tool, to facilitate synchronous collaborative inspection, visualization, and analysis of private and public mass spectrometry data remotely.

bioinformatics↗

bioRxiv2019

Opportunities for improved surveillance and control of infectious diseases from age-specific case data

One of the challenges faced by global disease surveillance efforts is the lack of comparability across systems. Reporting commonly focuses on overall incidence, despite differences in surveillance quality between and within countries. For most immunizing infections, the age-distribution of incident cases provides a more robust picture of trends in transmission. We present a framework to estimate transmission intensity for dengue virus from age-specific incidence data, and apply it to 363 administrative units in Thailand, Colombia, Brazil and Mexico. Our estimates correlate well with those derived from seroprevalence data (the gold-standard), capture the expected spatial heterogeneity in risk, and correlate with known environmental drivers of transmission. We show how this approach could be used to guide the implementation of control strategies such as vaccination. Since age-specific counts are routinely collected by many surveillance systems, they represent a unique opportunity to further our understanding of disease burden and risk for many diseases.

epidemiology↗