Biology subjects

Crawford, J. A.

Publications and source records attributed to Crawford, J. A..

5 recordsLinked to original sources

bioRxiv2024

Abundance and distribution of ringed and bearded seals in the Chukchi Sea: a reference for future trends

Ringed (Pusa hispida) and bearded (Erignathus barbatus) seals are vulnerable to decreasing sea ice habitat in the rapidly warming Arctic. In April and May of 2016, we conducted an aerial survey over the ice-covered areas of the Chukchi Sea using thermal and color cameras to detect and count these seals on sea ice. We related the seal counts to environmental variables, and used the relationships to estimate the species distributions and abundance throughout the Chukchi Sea. We accounted for incomplete detection due to seals missed by sensors or image processing errors, behavioral responses to aircraft, or incomplete availability (i.e. seals that are in water or in snow dens on the ice, called lairs). For the latter, we used wet/dry records from satellite-linked bio-loggers, and remotely sensed snow melt dates to estimate the proportion of ringed seal individuals that were visible on ice for each day and location surveyed. To our knowledge, this is the first study where use of lairs by ringed seals has been formally addressed while estimating abundance from aerial surveys. Ringed seal abundance was estimated as [Formula] = 592,577 (95% CI: 478,448-733,929), with highest densities near Kotzebue Sound, Alaska, USA. Bearded seal abundance was estimated as [Formula] = 147,421 (95% CI: 114,155-190,380), with highest densities in broken pack ice near Bering Strait. The influence of environmental variables, such as snow depth and ice type, was consistent with prior studies of the species natural history, particularly ringed seals preference for snow of adequate depth for lairs. Our study provides the first comprehensive abundance estimates for ringed and bearded seals in the Chukchi Sea and establishes a reference for monitoring how their populations respond to Arctic warming.

ecology↗

bioRxiv2023

Staphylococcus aureus skin colonization is mediated by SasG lectin variation

Staphylococcus aureus causes the majority of skin and soft tissue infections, but this pathogen only transiently colonizes healthy skin. However, this transient skin exposure enables S. aureus to transition to infection. Initial adhesion of S. aureus to skin corneocytes is mediated by surface protein G (SasG). Here, phylogenetic analyses reveal the presence of two major divergent SasG alleles in S. aureus, SasG-I and SasG-II. Structural analyses of SasG-II identified a unique non-aromatic arginine in the binding pocket of the lectin subdomain that mediates adhesion to corneocytes. Atomic force microscopy and corneocyte adhesion assays indicated SasG-II can bind to a broader variety of ligands than SasG-I. Glycosidase treatment resulted in different binding profiles between SasG-I and SasG-II on skin cells. Additionally, SasG-mediated adhesion was recapitulated using differentiated N/TERT keratinocytes. Our findings indicate that SasG-II has evolved to adhere to multiple ligands, conferring a distinct advantage to S. aureus during skin colonization.

microbiology↗

bioRxiv2022

Haul-out behavior and aerial survey detectability of seals in the Bering and Chukchi seas

Ice-associated seals rely on sea ice for a variety of activities, including pupping, breeding, molting, and resting. In the Arctic, many of these activities occur in spring (April - June) as sea ice begins to melt and retreat northward. Rapid acceleration of climate change in Arctic ecosystems is therefore of concern as the quantity and quality of suitable habitat is forecast to decrease. Improved estimates of seal population abundance are needed to properly monitor the impacts of these changes over time. In this paper, we use hourly percent-dry data from satellite-linked bio-loggers deployed between 2005 and 2021 to quantify the proportion of seals hauled out on ice. This information is needed to accurately estimate abundance from aerial survey counts of ice-associated seals (i.e., to correct for the proportion of animals that are in the water while surveys are conducted). In addition to providing essential data for survey availability calculations, our analysis also provides insights into the seasonal timing and environmental factors affecting haul-out behavior by ice-associated seals. We specifically focused on bearded (Erignathus barbatus), ribbon (Histriophoca fasciata), and spotted seals (Phoca largha) in the Bering and Chukchi seas. Because ringed seals (Phoca (pusa) hispida) can be out of the water but hidden from view in snow lairs analysis of their availability to surveys requires special consideration; therefore,they were not included in this analysis. Using generalized linear mixed pseudo-models to properly account for temporal autocorrelation, we fit models with covariates of interest (e.g., day-of-year, solar hour, age-sex class, wind speed, barometric pressure, temperature, precipitation) to examine their ability to explain variation in haul-out probability. We found evidence for strong diel and within-season patterns in haul-out behavior, as well as strong weather effects (particularly wind and temperature). In general, seals were more likely to haul out on ice in the middle of the day and when wind speed was low and temperatures were higher. Haul-out probability increased through March and April, peaking in May and early June before declining again. The timing and frequency of haul-out events also varied based on species and age-sex class. For ribbon and spotted seals, models with year effects were highly supported, indicating that the timing and magnitude of haul-out behavior varied among years. However, we did not find broad evidence that haul-out timing was linked to annual sea-ice extent. Our analysis emphasizes the importance of accounting for seasonal and temporal variation in haul-out behavior, as well as associated environmental covariates, when interpreting the number of seals counted in aerial surveys.

ecology↗

bioRxiv2020

Habitat patchiness drives spatial structure in morphological trait variation and co-variation in spotted salamanders (Ambystoma maculatum)

The influence of intraspecific trait variation on species interactions makes trait-based approaches critical to understanding eco-evolutionary processes. Because species occupy habitats that are patchily distributed in space, advancement in trait-based ecology hinges on understanding how trait variation is distributed within and between habitat patches. We sampled larval spotted salamanders (Ambystoma maculatum) across spatially discrete ponds to quantify within- and between-pond variation in mass, length, and their allometric relationship. Between-pond variation explained 7-35% of total observed variation in the length and shape of salamander larvae, depending on the body segment measured (i.e., head, body, or tail). Salamander tail morphology was more variable and exhibited more between-pond variation than head or body morphology. Salamander mass was highly variable and strongly correlated with total length. Allometric analysis revealed that the slopes of mass-length relationships were similar across ponds, but that intercepts differed across ponds. Preliminary evidence hinted that newly constructed ponds were a driver of the observed differences in mass-length relationships. Pond construction may therefore bolster trait diversity across the broader landscape, and in so doing instil more adaptive potential of salamander populations under current and future environmental change.

ecology↗

bioRxiv2017

Using remote camera traps to assess mammal and bird assemblages across a complex environmental landscape

Animals must navigate a complex mosaic of habitat types, both natural and artificial. As artificial habitats (e.g., agricultural fields) become increasingly abundant in many landscapes, species will be affected differently, depending on their habitat preferences. We investigated the diversity, richness, abundance, and biomass of mammals and birds with remote camera traps that optimized the capture of both large and small animals. Camera traps allowed us to capture natural rates of mammals and birds, which is difficult to obtain using human observers who can affect the behavior of animals and are limited in their spatio-temporal scope and ability to assess nocturnal communities. Our camera trap arrays were established along two transects in a local conservation reserve; one transect ran from an agricultural field to an upland forest and another from a wetland to an upland forest. Over the 6-week study our cameras recorded 2,245 images, within which we observed 483 individuals comprising 16 species of mammals and birds. Our data showed that species composition and abundances were only marginally different between the two transects, with species common to both transects not exhibiting any statistical difference in abundances. Coyotes and armadillos were unique to the riparian transect, and many more bird species were present along the riparian transect than the agricultural transect. Diversity, richness, and total community biomass did not differ significantly between the two transects nor along each transect but there were non-significant trends in predicted directions. Our results revealed that fewer species use the forest immediately adjacent to the agricultural field, but more species use the wetland and the forest immediately adjacent to the wetland. Our results corroborate other studies revealing that certain species are more common in forested areas but also that some species thought to prefer forested areas may actually be more habitat generalists than previously thought.

ecology↗