Biology subjects

Cote, L. E.

Publications and source records attributed to Cote, L. E..

5 recordsLinked to original sources

bioRxiv2025

Reciprocal E-cadherin signaling aligns apical surfaces between neighboring epithelial tissues to complete the C. elegans digestive tract

Epithelial cells form barriers with specialized apical membranes facing the external environment or internal lumens, yet how interconnected epithelial tubular systems form from cystic epithelial primordia is poorly studied. At the boundaries of cystic epithelial primordia, apical surfaces must correctly align to yield functional connections within and between organs. Here, we use the digestive tract of the developing C. elegans embryo to define a crucial two-cell tissue, the rectal valve (vir) cells, that mediate the connection and apical alignment between the posterior intestine and the rectum. Vir cells migrate while attached to the rectal primordium to create an essential connection with the intestinal primordium and complete the digestive tract. Vir contact with the intestine, through E-cadherin signaling, is required for the intestinal apical surface to undergo a transition from a cyst with an inaccessible apical surface to an open tube competent to connect with neighboring tissues. Ablation of vir cell progenitors results in a lethal disconnection between the intestinal and rectal apical surfaces due to failure of this first step in apical accessibility. To resolve the final gap in apical continuity between the intestine and rectum, vir cells develop bipolar apical surfaces, each facing the neighboring tissue. The intestine-facing apical puncta in vir require intestinal E-cadherin signaling to form and accumulate as well as to correctly partition apical proteins within vir cells. Together these results establish E-cadherin-based signaling as the crucial factor aligning apical surfaces across primordia as epithelial cells from different germ layers form a vital connection.

developmental biology↗

bioRxiv2025

Where are they now? Academic and career trajectories of national laboratory STEM internship alumni from community colleges, compared to those from universities

It is well-established that participation in technical or research experiences can support university student retention in science, technology, engineering, and mathematics (STEM). However, there is very little published research on the availability and impact of opportunities for community college students, particularly those provided by Department of Energy (DOE) national laboratories. To address this gap, we collected data from students who participated in two DOE sponsored programs spanning from 2009 to 2016: the Community College Internship (CCI) and Science Undergraduate Laboratory Internship (SULI) at Lawrence Berkeley National Laboratory (LBNL). Among CCI alumni, 90% earned a STEM bachelors degree and 88% are on a STEM career pathway. For SULI alumni, 91% earned a STEM bachelors degree and 71% are on a STEM career pathway. Overall, 80% of CCI alumni and 56% of SULI alumni have entered the STEM workforce, 5% of CCI alumni and 11% of SULI alumni are in the health workforce, and 6% of CCI alumni and 13% of SULI alumni are in the non-STEM workforce. Our findings indicate that community college students who participate in STEM professional development activities (such as the CCI program) are likely to complete their academic degrees and pursue STEM careers at rates comparable to those of university students. This investment in providing internships at LBNL for community college students has effectively supported their entry into STEM careers and their desire in pursuing work within the DOE complex in the years following their participation in these programs.

scientific communication and education↗

bioRxiv2023

"When I talk about it, my eyes light up!" Impacts of a national laboratory internship on community college student success

Participation in technical/research internships may improve undergraduate graduation rates and persistence in science, technology, engineering, and mathematics (STEM), yet little is known about the benefits of these activities a) for community college students, b) when hosted by national laboratories, and c) beyond the first few years after the internship. We applied Social Cognitive Career Theory (SCCT) to investigate alumni perspectives about how CCI at Lawrence Berkeley National Laboratory (LBNL) impacted their academic/career activities. We learned that alumni had low confidence and expectations of success in STEM as community college students. Participation in CCI increased their professional networks, expectations of success, and STEM skills, identity, and self-efficacy/confidence. Hispanic/Latinx alumni recalled the positive impact of mentors who prioritized personal connections, and women valued "warm" social environments. We propose several additions to the SCCT model, to better reflect the supports and barriers to STEM persistence for community college students.

scientific communication and education↗

bioRxiv2023

MAP9/MAPH-9 supports axonemal microtubule doublets and modulates motor movement

Microtubule doublets (MTDs) are a well conserved compound microtubule structure found primarily in cilia. However, the mechanisms by which MTDs form and are maintained in vivo remain poorly understood. Here, we characterize microtubule-associated protein 9 (MAP9) as a novel MTD-associated protein. We demonstrate that C. elegans MAPH-9, a MAP9 homolog, is present during MTD assembly and localizes exclusively to MTDs, a preference that is in part mediated by tubulin polyglutamylation. Loss of MAPH-9 caused ultrastructural MTD defects, dysregulated axonemal motor velocity, and perturbed cilia function. As we found that the mammalian ortholog MAP9 localized to axonemes in cultured mammalian cells and mouse tissues, we propose that MAP9/MAPH-9 plays a conserved role in supporting the structure of axonemal MTDs and regulating ciliary motors.

cell biology↗

bioRxiv2020

Proximity labeling at non-centrosomal microtubule-organizing centers reveals VAB-10B and WDR-62 as distinct microtubule regulators

Reorganization of microtubules from the centrosome to non-centrosomal subcellular sites is central to cell differentiation. To identify components of non-centrosomal microtubule organizing centers in differentiated cells of a living organism, we developed the biotin ligase-based proximity labeling approach TurboID for use in C. elegans. We identified proteins proximal to the non-centrosomal microtubule minus end protein PTRN-1/Patronin at the apical membrane of epithelial cells, focusing on two conserved proteins: spectraplakin protein VAB-10B and WDR-62, a protein we identify as homologous to vertebrate primary microcephaly disease gene WDR62. We found that WDR-62 and VAB-10B independently regulate the growth and localization of non-centrosomal microtubules and the apical targeting of microtubule minus end proteins. This regulation occurs downstream of cell polarity and in conjunction with actin. Our data suggest a division of labor where microtubule growth and anchoring are regulated by distinct complexes and uncover novel functions of spectraplakins and WDR62 family proteins.

cell biology↗