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Biology subjects

Costes, L.

Publications and source records attributed to Costes, L..

2 recordsLinked to original sources

Cell Cycle-Dependent Chromatin Motion: A Role for DNA Content Doubling Over Cohesion

The spatiotemporal organisation of chromatin in the eukaryotic nucleus is fundamental for genome regulation. Chromatin undergoes rapid remodelling and rearrangements within minutes, altering its diffusion properties. Considering the tight coupling between genome function and nuclear architecture, a key question is how chromatin dynamics adapt to or promote nuclear processes. To elucidate the underlying physical principles, we employed High-resolution Diffusion mapping (Hi-D) to track chromatin motion throughout interphase in live human cells. Our analysis, that considers both diffusive motion and drift generated by active forces, revealed that chromatin dynamics are heterogeneous, with distinct behaviours in different subnuclear zones. Notably, both diffusive and processive contributions to chromatin motion progressively decrease from G1 to G2 phase, with this reduction occurring uniformly across all subzones. This suggests a global mechanism driving the observed decrease in chromatin mobility during cell cycle progression. By combining genetic knockout experiments and polymer modelling, we demonstrate that the doubling of DNA content, rather than cohesin-mediated sister chromatid entrapment, is responsible for the gradual decrease in chromatin motion during the cell cycle in human nuclei. These findings provide new insights into the physical and functional organisation of chromatin and its regulation during cellular proliferation. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=78 SRC="FIGDIR/small/712877v1_ufig1.gif" ALT="Figure 1"> View larger version (26K): org.highwire.dtl.DTLVardef@1e251b4org.highwire.dtl.DTLVardef@1624203org.highwire.dtl.DTLVardef@1dc05eeorg.highwire.dtl.DTLVardef@9711d_HPS_FORMAT_FIGEXP M_FIG C_FIG

biophysics↗

Extracellular matrix stiffness modulates nuclear lamina organisation and sets nuclear conditions for PRC2 repression.

Capability of cells to respond to tissue-level elasticity has important physiological and pathological implications. Stiffening of the extracellular matrix (ECM) promotes invasive behaviour of cancer cells, supports the transformation of fibroblasts into cancer-associated fibroblasts and primes stem cell differentiation programs. Here, we investigated how ECM stiffness modulates the Nuclear Lamina (NL) and its impact on gene expression programs, epigenetic marking and 3D genome organisation. By combining hydrogel cell culturing of primary fibroblasts, genomics and super-resolution microscopy, we found that ECM stiffness modifies composition of the NL, modulates long range chromatin interactions, induces changes in chromatin motion and regulates thousands of genes. We identified a specific set of genes coding proteins involved in pathways related to mechanical adaptation such as adhesion and signalling. These genes harbour an apparent bivalent chromatin signature and are expressed under soft condition while repressed in stiff condition through Polycomb Repressive Complex 2 (PRC2). We found that this stiffness-specific repression is tempered by mechano-transduction and the NL. This work uncovers mechano-dependent NL composition, changes in 3D genome organisation and in chromatin motion which underlie adaptative gene expression programs controlled through PRC2.

genomics↗