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Biology subjects

Cossette, M.-L.

Publications and source records attributed to Cossette, M.-L..

3 recordsLinked to original sources

A deep population stratification and ongoing local adaptations of the range-expanding lovebug Plecia longiforceps

Rapidly range-expanding species provide a superb opportunity to study dynamic demography and ongoing adaptations to novel environments. Plecia longiforceps, a species of lovebug flies native to southeast China and Taiwan, has recently been expanding in Okinawa in Japan and Seoul in South Korea, where massive outbreaks are garnering public attention. Here we analyzed whole-genome sequences of 150 individuals across China, Korea, Okinawa, and Taiwan, including a newly identified northern Chinese population from Qingdao. We found a deep divergence between continental (Korea-China) and insular (Okinawa-Taiwan) populations and specify northern China and Taiwan as sources for Korea and Okinawa, respectively. Severely reduced genetic diversity in Korea and Qingdao suggests serial founder events during their northward expansion. An old split time between Qingdao and Korea ([~]3,500 generations ago) and multiple gene flows into Qingdao reject a simple scenario of a single recent northward migration. Selection signals in northern groups include genes associated with pigmentation, thermal sensing, lipid metabolism, and immunity. We observed a markedly reduced genetic diversity on X chromosome in northern populations, indicating ongoing strong sex-biased selection. Our findings portrait details of the northward range expansion in the species and highlight the role of adaptation for successful invasion at higher latitudes.

evolutionary biology↗

Comparative genomics of the world's smallest mammals reveals links to echolocation, metabolism, and body size plasticity

Originating 30 million years ago, shrews (Soricidae) have diversified into around 400 species worldwide. Shrews display a wide array-array of adaptations, with some species having developed distinctive traits such as echolocation, underwater diving, and venomous saliva. Accordingly, these tiny insectivores are ideal to study the genomic mechanisms of evolution and adaptation. We conducted a comparative genomic analysis of four shrew species and 16 other mammals to identify genomic variations unique to shrews. Using two existing shrew genomes and de novo assemblies for the maritime (Sorex maritimensis) and smoky shrew (S. fumeus), we identified mutations in conserved regions of the genomes, also known as accelerated regions, gene families undergoing significant expansion, and positively selected genes. Our analyses unveiled shrew-specific genomic variants in genes associated with the nervous, metabolic, and auditory systems, which can be linked to unique traits in shrews. Notably, genes suggested to be under convergent evolution in echolocating mammals exhibited accelerated regions in shrews, and pathways linked to putative body size plasticity were detected. These findings provide insight into the evolutionary mechanisms shaping shrew species, shedding light on their adaptation and divergence over time.

genomics↗

Differential methylation, epigenetic clocks, and island-mainland divergence in an insectivorous small mammal

Geographically isolated populations, specifically island-mainland counterparts, tend to exhibit phenotypic variation in many species. The so-called island syndrome occurs when different environmental pressures lead to insular divergence from mainland populations. This phenomenon can be seen in an island population of Nova Scotia masked shrews (Sorex cinereus), which have developed a specialized feeding habit and digestive enzyme compared to their mainland counterparts. Epigenetic modifications, such as DNA methylation (DNAm), can impact phenotypes by altering gene expression without changing the DNA sequence. Here, we used a de novo masked shrew genome assembly and a mammalian methylation array profiling 37 thousand conserved CpGs to investigate morphological and DNA methylation patterns between island and mainland populations. Island shrews were morphologically and epigenetically different than their mainland counterparts, exhibiting a smaller body size. A gene ontology enrichment analyses of differentially methylated CpGs implicated developmental and digestive system related pathways. Based on our shrew epigenetic clock, island shrews might also be aging faster than their mainland counterparts. This study provides novel insight on phenotypic and epigenetic divergence in island-mainland mammal populations and suggests an underlying role of methylation in island-mainland divergence.

genomics↗