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Biology subjects

Coronado-Ipina, M. A.

Publications and source records attributed to Coronado-Ipina, M. A..

2 recordsLinked to original sources

Mechanisms of viral budding through cellular membranes

Budding is a fundamental membrane-remodeling process central to many cellular functions and is exploited by numerous enveloped viruses to acquire their lipid envelopes. Despite extensive molecular characterization, the physical mechanisms that determine whether budding proceeds to completion or becomes stalled remain unclear. Here, we develop a theoretical model based on the Helfrich elastic formalism to investigate how membrane geometry and boundary conditions regulate the elastic energy of viral budding. We analyze two representative cases: budding from a flat membrane, characteristic of HIV-1 and alphaviruses, and budding from a vesicle, as observed for SARS-CoV-2 in the ER-Golgi intermediate compartment (ERGIC). Our results reveal distinct energetic pathways: vesicle-like geometries exhibit a stronger energetic bias toward closure, whereas flat membranes develop extended low-slope regions in the energy landscape that can hinder completion. Relaxing far-field boundary constraints reduces the energetic cost associated with membrane area conservation and renders the flat-membrane case energetically comparable to the vesicle case, providing a physical explanation for why viruses frequently bud adjacent to one another or within pre-curved membrane regions. Comparison with thin-section TEM images of alphavirus budding shows results consistent with the theoretical membrane profiles. Together, these findings establish how curvature coupling, boundary flexibility, and local membrane geometry cooperate to control the efficiency and completion of membrane budding.

biophysics↗

Multiple protein-protein interactions drive the assembly and budding of the Chikungunya virion

The assembly of enveloped viruses is a highly orchestrated process that depends on the coupling of multiple protein-protein interactions within a membrane environment. To gain mechanistic insight into this process, we use Chikungunya virus as a model system to study Alphavirus assembly, focusing on the interplay between core-spike and spike-spike interactions. We begin with coarse-grained molecular dynamics simulations to systematically explore how the symmetry of the nucleocapsid core, together with the relative strengths of spike-core and spike- spike interactions, influences budding efficiency and the emergence of icosahedral particle symmetry. Building on these computational predictions, we perform site-directed mutagenesis on Chikungunya virus 181/25 and examine the consequences for particle assembly and budding in cultured cells, as well as the impact of these mutations during in-cellulo assembly. Our results reveal that canonical core-spike interactions, while necessary, are not sufficient for successful assembly. Instead, lateral interactions among glycoproteins emerge as critical determinants of efficient budding, particle stability, and the maintenance of icosahedral symmetry. Together, these findings provide an integrated computational and experimental framework for understanding the molecular principles governing Alphavirus assembly.

biophysics↗