Search bioRxiv⌕ Search

Biology subjects

Coppotelli, B. M.

Publications and source records attributed to Coppotelli, B. M..

2 recordsLinked to original sources

Effects of a novel Paraburkholderia phage IPK on the phenanthrene degradation efficiency of the PAH-degrading strain Paraburkholderia caledonica Bk.

Phages are a major cause of bacterial mortality, affecting bacterial diversity and ecosystem functioning. However, the impact of phage-host interactions in contaminated environments and their role in pollutant biodegradation have been largely overlooked. We isolated and characterized a novel phage from a polycyclic aromatic hydrocarbon (PAH)-contaminated soil that infects the PAH-degrading bacterium Paraburkholderia caledonica Bk, and investigated the effect of different multiplicity of infection (MOI) on the degradation efficiency of phenanthrene. The phage IPK is a temperate phage with a wide pH and temperature tolerance and a burst size of 80 PFC.ml{square}1. The IPK phage was classified as a member of the Caudoviricetes, related to Pseudomonas and Burkholderia phages; however, its low intergenomic similarity indicates that it belongs to a new species. Three AMGs related to amino acid metabolism and to bacterial growth regulation were identified in the phage genome. The highest multiplicity of infection (MOI 10) showed a rapid recovery of the host density abundance and greater phenanthrene degradation than MOIs ranging from 0.01 to 1. This work highlights the critical role of phage-host interactions in modulating pollutant degradation efficiency, which could be a key for improving the establishment of inoculants in bioremediation processes.

microbiology↗

Challenging the impact of consortium diversity on bioaugmentation efficiency and native 1 bacterial community structure in a freshly PAH-contaminated soil

Polycyclic aromatic hydrocarbons (PAHs) are priority pollutants. We studied the effect of bioaugmentation with three allochthonous bacterial consortia with increasing diversity, SC AMBk, SC1 and SC4, in the structure and functionality of an acutely PAH-contaminated soil microbiome. The PAH supplementation increased the resource availability and the inocula were able to: efficiently degrade the PAHs supplemented after 15 days of incubation, become temporary established, and modify the number of total interactions with soil residents. Sphingobium and Burkholderia, both member of inoculants, were the major contributors to KO linked to degradation and to differentially abundant genera in inoculated microcosms, indicating their competitiveness in the soil. Bioaugmentation efficiency relayed on them, while further degradation, could be carried out by native microorganism. This is the one of the first works which applied three inocula, designed from naturally occurring bacteria and study their effect on the soil native community through the ANCOM-BC. We revealed that when a resource that can be use by the inoculant is added to the soil, it is not necessary a high-diversity inoculant to interact with native community and establish itself. This result has implications in the design of microbiome engineering for bioremediation processes

microbiology↗