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Biology subjects

Cooper, H.

Publications and source records attributed to Cooper, H..

2 recordsLinked to original sources

Visual contributions to the perception of speech in noise

Investigations of the role of audiovisual integration in speech-in-noise perception have largely focused on the benefits provided by lipreading cues. Nonetheless, audiovisual temporal coherence can offer a complementary advantage in auditory selective attention tasks. We developed an audiovisual speech-in-noise test to assess the benefit of visually conveyed phonetic information and visual contributions to auditory streaming. The test was a video version of the Childrens Coordinate Response Measure with a noun as the second keyword (vCCRMn). The vCCRMn allowed us to measure speech reception thresholds in the presence of two competing talkers under three visual conditions: a full naturalistic video (AV), a video which was interrupted during the target word presentation (Inter), thus, providing no lipreading cues, and a static image of a talker with audio only (A). In each case, the video/image could display either the target talker, or one of the two competing maskers. We assessed speech reception thresholds in each visual condition in 37 young ([≤] 35 years old) normal-hearing participants. Lipreading ability was independently assessed with the Test of Adult Speechreading (TAS). Results showed that both target-coherent AV and Inter visual conditions offer participants a listening benefit over the static image audio-only condition, with the full AV target-coherent condition providing the most benefit. Lipreading ability correlated with the audiovisual benefit shown in the full AV target-coherent condition, but not the benefit in the Inter target-coherent condition. Together our results are consistent with visual information providing independent benefits to listening, through lip reading and enhanced auditory streaming.

neuroscience↗

IS-capades of Klebsiella pneumoniae: Insertion sequences drive metabolic loss in obscure sub-lineages

IntroductionKlebsiella pneumoniae is an opportunistic pathogen which causes a wide spectrum of infections within healthcare settings and the community. Four K. pneumoniae sub-lineages defined with cgMLST/LINcodes are known to cause distinct infections of the nasal and/or upper respiratory passages: SL91 and SL10031 (also referred to as subspecies ozaenae), SL10032 (subspecies rhinoscleromatis) and SL82. These sub-lineages have also demonstrated reduced carbon source utilisation, which in other species has been linked with high loads of insertion sequences (IS). MethodsWe performed comparative genomics, analysed IS and constructed genome-scale metabolic models for available public sequences from these four sub-lineages and compared them to other sub-lineages from the wider K. pneumoniae population. ResultsThe four focal sub-lineages displayed significantly higher IS loads (median range 88 to 120 per genome) compared to other K. pneumoniae sub-lineages (median range 12 to 73). Notably, each K. pneumoniae sub-lineage had unique IS profiles, consistent with distinct evolutionary trajectories of IS acquisition and expansion. Across sub-lineages, higher IS loads were inversely associated with the number of metabolic model genes per genome (R2 = 0.16, p <0.001), as well as predicted aerobic substrate utilisation for phosphorus sources (R2 = 0.39, p<0.001) as per a second-degree polynomial regression model (n = 1,664 genomes). Additionally, the four IS-dense sub-lineages displayed a combination of convergent sub-lineage-specific substrate utilisation losses including parallel loss of 3-Phospho-D-glycerate, D-Glycerate-2-phosphate, Phosphoenolpyruvate utilisation as carbon/phosphorus sources. Finally, inspection of IS insertion sites demonstrated frequent and non-destructive insertion next to transcriptional, carbohydrate and amino acid metabolism genes. ConclusionsIS loads were significantly and inversely associated with metabolic substrate usage within K. pneumoniae, whereby sub-lineages that had higher numbers of IS also had reduced metabolic capacity. We hypothesise that an insertional tolerance model explains these findings, whereby IS can only insert into "metabolically-tolerable" sites for the individual cell and any impacts on metabolism are not detrimental for survival.

genomics↗