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Cohen-Fultheim, R.

Publications and source records attributed to Cohen-Fultheim, R..

3 recordsLinked to original sources

Inositol hexakisphosphate Functions as a Cofactor and Modulator of ADAR1 Activity

Adenosine-to-inosine (A-to-I) RNA editing by ADAR1 is a key post-transcriptional modification, and mutations in ADAR1 lead to Aicardi-Goutieres syndrome (AGS), an autoimmune disorder. Despite its biological and clinical relevance, the regulation of ADAR1 activity remains incompletely understood. Using a combination of biochemical approaches, inositol-pentakisphosphate 2-kinase (IPPK)-knockout cells, molecular dynamics simulations, and a cell-permeable inositol hexakisphosphate (IP6) prodrug (Pro-IP6), we demonstrate that IP6 depletion drastically reduces global RNA editing, while supplementation with Pro-IP6 restores and even enhances editing levels. Furthermore, we identify the C6-phosphate of IP6 as a critical determinant of ADAR1 catalytic efficiency, functioning within a hydrogen-bonding network that indirectly coordinates a Zn{superscript 2}-ion. Finally, we show that the AGS-associated ADAR1 mutation N907S impairs RNA editing activity, most likely by altering the hydrogen-bond interaction network linking IP6 to the ADAR1 catalytic center. Together, these findings identify IP6 as an essential cofactor and regulator of ADAR1 activity and highlight cofactor availability and interaction networks as strategies for therapeutically modulating RNA editing.

molecular biology↗

A Cytoplasmic Index for Quantifying Immune-Related A-to-I RNA Editing

Distinguishing self from non-self is a major challenge for the immune system. Endogenous cytoplasmic double-stranded RNA (dsRNA) can mimic viral RNA and activate immune sensors like MDA5. ADAR1-mediated A-to-I editing disrupts base-pairing to suppress immunogenicity of these endogenous structures. Global editing indices are widely used to probe this crucial ADAR1 function. However, they are dominated by nuclear pre-mRNA edits with limited immune relevance. Here we present the Cytoplasmic Editing Index (CEI) that quantifies editing specifically within dsRNA structures in mature cytoplasmic transcripts, which carry higher immunological risk. Analyzing over 25,000 RNA-seq samples, we demonstrate CEI captures ADARp150 activity and outperforms the global editing index in terms of sensitivity and signal-to-noise, enabling sharper tissue-specific profiling, enhanced detection power of infection-induced editing changes, and stronger association with cancer prognoses. An open-source, cloud-native pipeline delivers end-to-end, reproducible analysis at very low cost, supporting immediate, scalable adoption. Micro-abstractThe Cytoplasmic Editing Index (CEI) quantifies immune-relevant A-to-I RNA editing in inverted Alu clusters within 3'UTRs, capturing interferon-inducible ADAR1p150-dependent events. Analysis of >25,000 RNA-seq samples demonstrates CEI outperforms the global editing index in sensitivity and specificity, resolving tissue- and infection-linked editing patterns. An open-source, cloud-native pipeline enables scalable, low-cost deployment. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=82 SRC="FIGDIR/small/692070v1_ufig1.gif" ALT="Figure 1"> View larger version (34K): org.highwire.dtl.DTLVardef@159ae9org.highwire.dtl.DTLVardef@6d6119org.highwire.dtl.DTLVardef@101b4a1org.highwire.dtl.DTLVardef@f9d96b_HPS_FORMAT_FIGEXP M_FIG C_FIG

genomics↗

Disrupted RNA editing in beta cells mimics early stage type 1 diabetes

A major hypothesis for the etiology of type 1 diabetes (T1D) postulates initiation by viral infection, leading to double-stranded RNA (dsRNA)-mediated interferon response; however, a causal virus has not been identified. Here we use a mouse model, corroborated with human data, to demonstrate that endogenous dsRNA in beta-cells can lead to a diabetogenic immune response, thus identifying a virus-independent mechanism for T1D initiation. We found that disruption of the RNA editing enzyme ADAR in beta-cells triggers a massive interferon response, islet inflammation and beta-cell failure, with features bearing striking similarity to early-stage human T1D. Glycolysis via calcium enhances the interferon response, suggesting an actionable vicious cycle of inflammation and increased beta-cell workload. One sentence summaryAdar inactivation in beta-cells triggers a glucose-dependent interferon response causing insulitis and diabetes

cell biology↗