Biology subjects

Cohen, J. R.

Publications and source records attributed to Cohen, J. R..

6 recordsLinked to original sources

bioRxiv2026

Division-Specific Organization of a Shared Functional Scaffold in the Early-Life Human Brain

Early cognition and behavior emerge from coordinated maturation of functional systems spanning the brain, making cross-division integration essential for defining whole-brain architecture and understanding its role in neurodevelopment. Yet early human functional development is still largely investigated through cortical networks or through isolated, coarsely resolved noncortical structures, leaving unclear how this integrated architecture is organized across the cerebral cortex, subcortex and cerebellum. Moving beyond structure-isolated and adult-derived maps, we create a reproducible, fine-grained Early-Life Whole-Brain Functional Parcellation (UNC-ELF) spanning birth to six years. Using this framework, we identify a shared functional scaffold expressed through distinct division-specific modes: differentiated and dual-polarity cortical organization, spatially graded cerebellar organization with blended functional transition zones, and nucleus-constrained subcortical mosaics of multi-system affiliation. Across early childhood, the scaffold is selectively refined through heterogeneous, nonlinear connectivity trajectories, with major inflections concentrated in infancy. Age-, sex- and prospective cognition-related variation is differentially encoded across distinct connectomic components. Together, these findings reframe early functional brain development as coordinated refinement of a shared but nonuniform whole-brain scaffold and establish UNC-ELF as a unified reference for resolving typical and atypical functional organization across the developing brain.

neuroscience↗

bioRxiv2026

Functional brain organization is stable within individuals across years

Brain regions exhibit dynamic yet highly coordinated activity patterns that form large-scale functional networks measurable through resting-state correlations. While their association with fluctuating activity may intuitively suggest functional networks to be temporally transient and dependent on state, a growing body of literature suggests that they are person-specific and stable across days. If truly person-specific, then functional networks should preserve unique characteristics over extended periods. To test this hypothesis, we collected longitudinal precision fMRI data ([≥]60 minutes per participant per time point) from 10 healthy young adults across 1-3 year intervals, as well as three adults over 8-13 years. We further replicated findings in the MyConnectome dataset and its 10-year follow-up. Functional network organization--when sufficient per-participant data were collected-- remained largely stable within individuals over prolonged periods of up to 13 years, suggesting that individualized brain organization constitutes persistent features of personal identity that may be supported by homeostatic mechanisms. SIGNIFICANCEWhile many aspects of brain function are portrayed as dynamic and malleable, our study provides evidence for the long-term preservation of functional organization of the healthy young adult brain. Whole-brain functional organization exhibited unique individual characteristics that were preserved for years, even over a decade. The stability of such individualized neural architecture suggests that the brain encodes features of personhood that may be invariant across contexts and temporal fluctuations. This observation reframes our understanding of brain resilience and plasticity by offering new insights into the extent that homeostatic mechanisms of brain organization can withstand stressors and environmental changes through time to maintain a constant functional organization. These insights pave the way for a more comprehensive understanding of the neural mechanisms behind this stability, with the possibility of pinpointing critical markers of healthy brain function and its disruptions.

neuroscience↗

bioRxiv2025

Task-evoked functional connectivity exhibits novel and strengthened relationships with executive function relative to the resting state

Executive functioning in children has been linked to intrinsic brain network organization assessed during the resting state, as well as to brain network organization during the performance of cognitive tasks. Prior work has established that task-based brain networks are stronger predictors of behavior than resting state networks, yet it is unclear if tasks only strengthen relationships that exist weakly at rest or if tasks also evoke unique relationships. A lack of discernment regarding how tasks and the resting state commonly and uniquely support executive functions precludes a holistic understanding of the neurobiological basis of executive functions. This project investigated differences in brain network organization and relationships with executive function ability between the resting state and two executive function tasks, a stop signal task and an emotional n-back task, using the Adolescent Brain and Cognitive Development (ABCD) Study dataset. Both executive function tasks evoked a more integrated network organization than the resting state, and executive function ability was related to different aspects of brain network organization during the resting state and during the tasks. Further, task-related shifts in brain network organization evoked several new relationships with executive function that were not detectable during the resting state and strengthened a relationship with executive function that existed weakly during the resting state. Overall, this study establishes a distinction between common and unique features of intrinsic and task-evoked brain function that facilitate executive function in children. SignificanceExecutive functions, which encompass goal-directed behaviors critical for life success, emerge from interactions within and between networks of brain regions. Here, we tested how executive functions are linked to functional brain network interactions during the resting state, in which there are no external cognitive demands, and during executive function tasks in late childhood. We found that brain network organization during the performance of executive function tasks evoked a combination of new and strengthened relationships with executive function ability compared to the resting state. This suggests that the brain facilitates executive function performance in children through the recruitment of specific functional interactions during the enactment of executive function.

neuroscience↗

bioRxiv2024

Differential reconfiguration of brain networks in children in response to standard versus rewarded go/no-go task demands

Response inhibition and sustained attention are critical for higher-order cognition and rely upon specific patterns of functional brain network organization. This study investigated how functional brain networks reconfigure to execute these cognitive processes during a go/no-go task with and without the presence of rewards in 26 children between the ages of 8 and 12 years. First, we compared task performance between standard and rewarded versions of a go/no-go task. We found that the presence of rewards reduced commission error rate, a measure considered to indicate improved response inhibition. Tau, thought to index sustained attention, did not change across task conditions. Next, changes in functional brain network organization were assessed between the resting state, the standard go/no-go task, and the rewarded go/no-go task. Relative to the resting state, integration decreased and segregation increased during the standard go/no-go task. A further decrease in integration and increase in segregation was observed when rewards were introduced. These patterns of reconfiguration were present globally and across several key brain networks of interest, as well as in individual regions implicated in the processes of response inhibition, attention, and reward processing. These findings align with patterns of brain network organization found to support the cognitive strategy of sustained attention, rather than response inhibition, during go/no-go task performance and suggest that rewards enhance this organization. Overall, this study used large-scale brain network organization and a within-subjects multi-task design to examine different cognitive strategies and the influence of rewards on response inhibition and sustained attention in late childhood.

neuroscience↗

bioRxiv2024

A network correspondence toolbox for quantitative evaluation of novel neuroimaging results

Decades of neuroscience research has shown that macroscale brain dynamics can be reliably decomposed into a subset of large-scale functional networks, but the specific spatial topographies of these networks and the names used to describe them can vary across studies. Such discordance has hampered interpretation and convergence of research findings across the field. To address this problem, we have developed the Network Correspondence Toolbox (NCT) to permit researchers to examine and report spatial correspondence between their novel neuroimaging results and sixteen widely used functional brain atlases, consistent with recommended reporting standards developed by the Organization for Human Brain Mapping. The atlases included in the toolbox show some topographical convergence for specific networks, such as those labeled as "default" or "visual". Network naming varies across atlases, particularly for networks spanning frontoparietal association cortices. For this reason, quantitative comparison with multiple atlases is recommended to benchmark novel neuroimaging findings. We provide several exemplar demonstrations using the Human Connectome Project task fMRI results and UK Biobank independent component analysis maps to illustrate how researchers can use the NCT to report their own findings through quantitative evaluation against multiple published atlases. The NCT provides a convenient means for computing Dice coefficients with spin test permutations to determine the magnitude and statistical significance of correspondence among user-defined maps and existing atlas labels. The NCT also includes functionality to incorporate additional atlases in the future. The adoption of the NCT will make it easier for network neuroscience researchers to report their findings in a standardized manner, thus aiding reproducibility and facilitating comparisons between studies to produce interdisciplinary insights.

neuroscience↗

bioRxiv2020

Differential Contributions of Static and Time-Varying Functional Connectivity to Human Behavior

Measures of human brain functional connectivity acquired during the resting-state track critical aspects of behavior. Recently, fluctuations in resting-state functional connectivity patterns - typically averaged across in traditional analyses - have been considered for their potential neuroscientific relevance. There exists a lack of research on the differences between traditional "static" measures of functional connectivity and newly-considered "time-varying" measures as they relate to human behavior. Using functional magnetic resonance imagining (fMRI) data collected at rest, and a battery of behavioral measures collected outside the scanner, we determined the degree to which each modality captures aspects of personality and cognitive ability. Measures of time-varying functional connectivity were derived by fitting a Hidden Markov Model. To determine behavioral relationships, static and time-varying connectivity measures were submitted separately to canonical correlation analysis. A single relationship between static functional connectivity and behavior existed, defined by measures of personality and stable behavioral features. However, two relationships were found when using time-varying measures. The first relationship was similar to the static case. The second relationship was unique, defined by measures reflecting trialwise behavioral variability. Our findings suggest that time-varying measures of functional connectivity are capable of capturing unique aspects of behavior to which static measures are insensitive. Author SummaryCorrelated patterns of brain activity measured in the absence of any prescribed task show meaningful temporal fluctuations. However, the manner by which such fluctuations track aspects of human behavior remains unresolved. The current report takes a data-driven approach to characterize how time-varying patterns of human brain functional connectivity differ from traditional static measures in their ability to track aspects of personality and cognitive ability. We determine that time-varying patterns of functional connectivity not only track similar aspects of behavior as do static measures, but also unique behavioral qualities as well, specifically those that reflect behavioral variability. These results highlight the importance and relevance of examining time-varying measures of functional connectivity.

neuroscience↗