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Biology subjects

Clegg, S. R.

Publications and source records attributed to Clegg, S. R..

2 recordsLinked to original sources

High prevalence of multi-drug resistant bacteria in faecal samples from UK passerine birds

Wild birds are a near ubiquitous sight in gardens, offering pleasure to many people through supplementary feeding, song, or other interactions. However, they are also potential carriers of many pathogens, including Campylobacter, Salmonella, Enterococcus and E. coli; some of these may be resistant to commonly used drugs. This study collected faecal samples from multiple species of UK passerine birds, isolating bacterial pathogens to assess carriage and drug resistances associated with those bacteria. 75% of birds were carrying at least one bacterial species which was multi drug resistant (MDR; resistant to three or more classes of antimicrobial), with 11.6% of birds carrying Salmonella spp., 18.9% carrying Campylobacter spp., 78% carrying Enterococcus spp., and all carrying E. coli strains. Many of these strains were shown to be MDR with 70%, 88%, 32% and 59% respectively. Intercontinental migration was shown to be a risk factor for carriage of many of the pathogens, as was an associated with human habitation. Age was also a risk factor with younger birds twice as likely to carry Campylobacterspp. than adults, and house sparrows (Passer domesticus) and blackbirds (Turdus merula) being particularly high-level carriers compared to other species. The high-level carriage and shedding of MDR E. coli and other zoonotic pathogens within the faecal samples of multiple species of passerine birds offers a timely reminder of the risks which these bacteria, and their drug resistance profiles may pose to human and animal health in the UK and worldwide. It also shows a level of high environmental contamination, which birds may continue to contribute towards, until our use of antibiotics, and level of drug resistant bacteria is decreased. Developing mechanisms for reducing levels of carriage of MDR bacteria in wild bird populations through, for example, increased hygiene around bird feeding practices, may be key in reducing environmental contamination. HighlightsO_LI75% of wild birds were carrying at least one MDR bacterium C_LIO_LIYoung birds were twice as likely to carry Campylobacter than adults C_LIO_LIHouse sparrows and blackbirds were particularly likely to carry Campylobacter C_LIO_LIAll intercontinental migrants with Salmonella carried MDR strains C_LI

ecology↗

Emerging variants of canine enteric coronavirus associated with seasonal outbreaks of severe canine gastroenteric disease

Canine enteric coronavirus (CECoV) variants have an emerging role in severe outbreaks of canine gastroenteritis. Here we used syndromic health data from a sentinel network of UK veterinary practices to identify an outbreak of severe canine gastroenteritis. Affected dogs frequently presented with vomiting, diarrhoea and inappetence. Data from sentinel diagnostic laboratories showed similar seasonal increases in CECoV diagnosis. Membrane glycoprotein (M) gene sequence analysis implied wide geographical circulation of a new CECoV variant. Whole genome sequencing suggested the main circulating 2022 variant was most closely related to one previously identified in 2020 with additional spike gene recombination; all variants were unrelated to CECoV-like viruses recently associated with human respiratory disease. Identifying factors that drive population-level evolution, and its implications for host protection and virulence, will be important to understand the emerging role of CECoV variants in canine and human health, and may act as a model for coronavirus population adaptation more widely.

genomics↗