Biology subjects

Clegg, S. M.

Publications and source records attributed to Clegg, S. M..

9 recordsLinked to original sources

bioRxiv2026

Morphological shifts consistent with the island syndrome in land-bridge island birds

Land-bridge islands are former mainland areas isolated by post-glacial sea-level rise (<15,000 years) and the most common island type. Because of their recurrent connectivity with continents, it is unclear whether species on land-bridge islands can undergo evolutionary changes associated with the more isolated oceanic islands ( island syndrome). Here, we test the hypothesis that the selective environment on land-bridge islands exerts predictable and consistent evolutionary shifts in morphological traits of songbirds. We apply Bayesian hierarchical models to a morphological dataset of 6,917 individuals comprising 185 species of songbirds from four land-bridge islands (Bioko, Sri Lanka, Taiwan and Trinidad) and adjacent continents. Across all 185 species, we find that occurrence on a land-bridge island has clear directional effects on five morphological traits related to beak, wing, and tarsus, as well as a general increase in body size. At the species level, 57 out of 90 tested species exhibit significant morphological divergence between land-bridge island and mainland, yet for only 20 of these are the land-bridge island populations recognised as distinct endemic subspecies. Our results show that occurrence on land-bridge islands has a detectable effect on passerine morphology consistent with the island syndrome, and suggest these islands harbour previously unrecognized unique biodiversity.

evolutionary biology↗

bioRxiv2026

Long-distance dispersal drives global tropical distributions in a widespread moth lineage (Lepidoptera: Limacodidae)

Understanding how global biodiversity patterns arise is a central theme of biogeography, with contemporary theory recognising the roles of both dispersal and vicariance. Genera that are broadly distributed can provide important systems for disentangling the relative influence of these processes across evolutionary timescales. However, many lesser-studied groups, particularly those in the tropics, lack a densely sampled phylogeny which hinders robust inference of their evolutionary and biogeographic history. This study investigates the global diversification and systematics of the putative pantropical moth genus Parasa Moore (Lepidoptera: Limacodidae), with the aim of assessing the relative importance of dispersal and vicariance in shaping its distribution. Medium-coverage whole genome sequencing of specimens predominantly from museum collections were used to generate a globally sampled time-calibrated phylogeny of Parasa and associated genera (the Parasa-complex). Ancestral range estimation analyses were employed to infer geographical origins and possible dispersal times between bioregions. The Parasa-complex originated in Africa in the late Oligocene ([~]24 Ma) and, through a series of long-distance dispersal events during the early-mid Miocene, expanded into Asia ([~]23 Ma) and the Americas ([~]21 Ma). Across all regions, dispersal was the dominant process shaping present-day distributions, with a limited role of vicariance in some subregions. Phylogenetic analyses further demonstrated that Parasa is not a monophyletic genus, with multiple independent lineages contributing to its apparent pantropical distribution. These findings highlight a central role of long-distance dispersal in generating certain global distributions. The results support a dynamic model of range evolution involving rapid Miocene dispersal and subsequent regional diversification. In addition, the non-monophyly of Parasa requires substantial taxonomic revision, underscoring the importance of robust phylogenetic frameworks for interpreting global biodiversity patterns.

evolutionary biology↗

bioRxiv2026

Transmission strategy modulates parasite biogeography in an island-colonising bird

Parasites occur in every ecosystem, although their dispersal is often constrained by the availability of hosts or vectors. Here, we explore how variation in parasite life history traits, particularly transmission strategy, may influence their distributions. Specifically, we test whether a variety of parasites ad-here to the rules of island biogeography, and whether their distributions vary with transmission strategy. We utilised broad-spectrum parasite detection from existing Whole Genome Sequence (WGS) data to characterise parasites with varying transmission strategies from the blood of a passerine bird, the silvereye (Zosterops lateralis), sampled across 25 islands in the South Pacific and from five of the states in mainland Australia. Overall, parasite richness was higher on mainland Australia compared to islands and decreased with distance of islands from the Australian continent. However, these patterns were dependent on transmission strategy. For parasites transmitted by flying insect vectors, richness decreased on islands compared to the mainland. However, increasing isolation from the mainland among islands had little further impact. On the other hand, richness of directly transmitted parasites and those requiring another intermediate host declined sharply with increasing distance from the mainland. While islands may act as an initial barrier to colonisation for parasites relying on flying insect vectors, their highly dispersive vectors may subsequently reduce the impact of increasing isolation distance on richness. Our work underscores the importance of considering parasite life-histories and their transmission strategies for understanding the processes that shape parasite communities on islands.

ecology↗

bioRxiv2026

Life cycle complexity shapes parasite sharing amongst migratory and resident hosts

Migratory animals are potentially important parasite dispersers. However, understanding the impact of host migration on parasite distributions is challenging because variation in parasite life histories can mediate dispersal potential. Furthermore, studies of parasite dispersal via host migration often compare parasites in different species of migrant and resident hosts, despite differences in host phylogeny, ecology, and exposure history, which can complicate ascertaining the impact of migration. The Tasmanian population of silvereye (Zosterops lateralis lateralis) exhibits partial migration. Some members of the population overwinter on the Australian mainland, where they co-occur with residents of another silvereye subspecies (Z. l. cornwalli). Utilising targeted PCR, metabarcoding and high-throughput sequencing, we characterise a range of parasite genera from blood and faecal samples in Tasmanian resident, migrant and mainland resident birds. Greater parasite richness was documented in migrant individuals, possibly reflecting exposure to varied parasite faunas at stopovers or during overwintering. The increased richness was primarily driven by parasites with simple life cycles. Reduced sharing of parasites with complex life cycles amongst migratory and resident host populations may be explained by ecological constraints in establishing transmission, such as vector or secondary host availability. Our study exemplifies the utility of molecular methods for characterising multi-parasite systems and makes use of a single host species to provide insights on patterns of parasite distributions that result from migratory movements. Knowing how parasite life histories constrain or promote dispersal via regular host migration will be essential for predicting future patterns of pathogen dispersal under climate change and shifting migratory regimes.

ecology↗

bioRxiv2024

Islands promote diversification within the silvereye clade: a phylogenomic analysis of a great speciator

Geographic isolation plays a pivotal role in speciation by restricting gene flow between populations through distance or physical barriers. However, the speciation process is complex, influenced by the interplay between dispersal ability and geographic isolation, especially in "great speciators" - bird species present on multiple islands that, at the same time, have many subspecies. Comparing population differentiation in both continental and insular settings can help us to understand the importance of geographical context in the emergence of great speciators. The highly diverse white-eye family Zosteropidae includes several great speciators, including the silvereye (Zosterops lateralis) which consists of 16 subspecies, 11 occurring on islands. The distribution of the silvereye on the Australian continent and numerous southwest Pacific islands allows us to explore the influence of different forms of geographic isolation on population divergence. To do this, we conducted a comprehensive phylogenomic analysis of the silvereye and compared patterns of population divergence in insular versus continental silvereye populations. We estimate that the silvereye lineage emerged approximately 1.5 million years ago, followed by the split of the two main silvereye clades: Southern Melanesia and the broader South Pacific (encompassing Australia, New Zealand, and outlying islands). Continental populations show low genetic population structure, which suggests that they can overcome multiple forms of geographic barriers across long distances. In contrast, most island populations are highly structured even over relatively short distances. Divergence statistics further support the idea that water barriers lead to a higher population differentiation when compared to continental distances. Our results indicate that islands promote divergence and provide an empirical example of the geographical conditions that result in the emergence of great speciators.

evolutionary biology↗

bioRxiv2023

Standing genetic variation and de novo mutations underlie parallel evolution of island bird phenotypes

Parallel evolution occurs when the same trait evolves in closely related lineages in response to similar ecological contexts and provides some of the best examples of determinism in evolutionary biology. However, from a genetic standpoint, this process can be driven by either new mutations that appear independently in each diverging population or by selection on existing genetic variation common to both lineages. Small-bodied birds, for example, tend to increase in size after they colonise a new island, following what is known as the island rule. Such is the case of the silvereye (Zosterops lateralis), a prolific natural coloniser of southwest Pacific islands. Island forms of this bird species increase in body size after they establish, with the pattern and pace of change consistent with directional natural selection and evident even in the most recent colonisations within the last 200 years. The system provides an exceptional opportunity to explore the genomic basis of repeated body size evolution. We sequenced 377 whole genomes from 31 different silvereye populations, which revealed that both mechanisms are at play: in some lineages, new mutations are highly associated with body and bill size, but there are also highly associated polymorphisms present across all populations. Our research sheds light on the genomic basis of repeated body size evolution and emphasises that multiple molecular mechanisms can underlie similar evolutionary trajectories even within a single taxon.

evolutionary biology↗

bioRxiv2023

Candidate gene length polymorphisms are linked to dispersive behaviour: searching for a mechanism behind the "paradox of the great speciators"

The "paradox of the great speciators" has puzzled evolutionary biologists for over half a century. A great speciator requires excellent dispersal ability to explain its occurrence on multiple islands, but reduced dispersal ability to explain its high number of subspecies. A rapid reduction in dispersal ability is often invoked to solve this apparent paradox, but a proximate mechanism has not been identified. Here, we explore the role of six genes linked to migration and animal personality differences (CREB1, CLOCK, ADCYAP1, NPAS2, DRD4, and SERT) in 20 South Pacific populations of silvereye (Zosterops lateralis) that range from highly sedentary to partially migratory, to determine if genetic variation is associated with dispersal propensity. We detected genetic associations in three of the six genes: i) in a partial migrant population, migrant individuals had longer microsatellite alleles at the CLOCK gene compared to resident individuals from the same population; ii) CREB1 displayed longer average microsatellite allele lengths in recently colonised island populations (< 200 years), compared to evolutionarily older populations. Bayesian broken stick regression models supported a reduction in CREB1 length with time since colonisation and decreasing dispersal propensity; and iii) like CREB1, DRD4 showed differences in polymorphisms between recent and old colonisations but a further sample size is needed to confirm. ADCYAP1, SERT, and NPAS2 were variable but that variation was not associated with dispersal propensity. The association of genetic variants at three genes with migration and dispersal ability in silvereyes provides the impetus for further exploration of genetic mechanisms underlying dispersal shifts, and the prospect of resolving a long-running evolutionary paradox through a genetic lens.

evolutionary biology↗

bioRxiv2022

Density dependent environments can select for extremes of body size

Body size variation is an enigma. We do not understand why species achieve the sizes they do, and this means we also do not understand the circumstances under which gigantism or dwarfism is selected. We develop size-structured integral projection models to explore evolution of body size and life history speed. We make few assumptions and keep models simple: all functions remain constant across models except for the one that describes development of body size with age. We set sexual maturity to occur when size attains 80% of the asymptotic size, which is typical of a large mammal, and allow negative density dependence to only affect either reproduction or juvenile survival. Fitness - the quantity that is maximized by adaptive evolution - is carrying capacity in our models, and we are consequently interested in how it changes with size at sexual maturity, and how this association varies with development rate. The simple models generate complex dynamics while providing insight into the circumstances when extremes of body size evolve. The direction of selection leading to either gigantism or dwarfism crucially depends on the proportion of the population that is sexually mature, which in turn depends on how the development function determines the survivorship schedule. The developmental trajectories consequently interact with size-specific survival or reproductive rates to determine the best life history and the optimal body size emerges from that interaction. These dynamics result in trade-offs between different components of the life history, with the form of the trade-off that emerges depending upon where in the life history density dependence operates most strongly. Empirical application of the approach we develop has potential to help explain the enigma of body size variation across the tree of life.

evolutionary biology↗

bioRxiv2020

The genomic landscape of divergence across the speciation continuum in island-colonising silvereyes (Zosterops lateralis)

A goal of the genomic era is to infer the evolutionary dynamics at play during the process of speciation by analysing the genomic landscape of divergence. However, empirical assessments of genomic landscapes under varying evolutionary scenarios are few, limiting the ability to achieve this goal. Here we combine RAD-sequencing and individual-based simulations to evaluate the genomic landscape in the silvereye (Zosterops lateralis). Using comparisons matched for divergence timeframe and gene flow context, we document how genomic patterns accumulate along the speciation continuum. In contrast to previous predictions, our results provide limited support for the idea that divergence accumulates around loci under divergent selection or that genomic islands widen with time. While a small number of genomic islands were found in populations diverging with and without gene flow, in few cases were SNPs putatively under selection tightly associated with genomic islands. Furthermore, we modelled the transition from localised to genome-wide levels of divergence using individual-based simulations that considered only neutral processes. Our results challenge the ubiquity of existing verbal models that explain the accumulation of genomic differences across the speciation continuum and instead support the idea that divergence both within and outside of genomic islands is important during the speciation process. DATA ACCESSION NUMBERSResequencing data from this study have been submitted to the National Center for Biotechnology Information (NCBI; https://www.ncbi.nlm.nih.gov) under accession number PRJNA489169.

evolutionary biology↗