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Biology subjects

Chowdhary, G.

Publications and source records attributed to Chowdhary, G..

2 recordsLinked to original sources

LoCS-Net: Localizing Convolutional Spiking Neural Network for Fast Visual Place Recognition

Visual place recognition (VPR) is the ability to recognize locations in a physical environment based only on visual inputs. It is a challenging task due to perceptual aliasing, viewpoint and appearance variations and complexity of dynamic scenes. Despite promising demonstrations, many state-of-the-art VPR approaches based on artificial neural networks (ANNs) suffer from computational inefficiency. Spiking neural networks (SNNs), on the other hand, implemented on neuromorphic hardware, are reported to have remarkable potential towards more efficient solutions computationally, compared to ANNs. However, the training of the state-of-the-art (SOTA) SNNs for the VPR task is often intractable on large and diverse datasets. To address this, we develop an end-to-end convolutional SNN model for VPR, that leverages back-propagation for tractable training. Rate-based approximations of leaky integrate-and-fire (LIF) neurons are employed during training to enable back-propagation, and the approximation units are replaced with spiking LIF neurons during inference. The proposed method outperforms the SOTA ANNs and SNNs by achieving 78.2% precision at 100% recall on the challenging Nordland dataset, compared with 53% SOTA performance, and exhibits competitive performance on the Oxford RobotCar dataset while being easier to train and faster in both training and inference when compared to other ANN and SNN-based methods.

neuroscience↗

In-field whole plant maize architecture characterized by Latent Space Phenotyping

Collecting useful, interpretable, and biologically relevant phenotypes in a resource-efficient manner is a bottleneck to plant breeding, genetic mapping, and genomic prediction. Autonomous and affordable sub-canopy rovers are an efficient and scalable way to generate sensor-based datasets of in-field crop plants. Rovers equipped with light detection and ranging (LiDar) can produce three-dimensional reconstructions of entire hybrid maize fields. In this study, we collected 2,103 LiDar scans of hybrid maize field plots and extracted phenotypic data from them by Latent Space Phenotyping (LSP). We performed LSP by two methods, principal component analysis (PCA) and a convolutional autoencoder, to extract meaningful, quantitative Latent Space Phenotypes (LSPs) describing whole-plant architecture and biomass distribution. The LSPs had heritabilities of up to 0.44, similar to some manually measured traits, indicating they can be selected on or genetically mapped. Manually measured traits can be successfully predicted by using LSPs as explanatory variables in partial least squares regression, indicating the LSPs contain biologically relevant information about plant architecture. These techniques can be used to assess crop architecture at a reduced cost and in an automated fashion for breeding, research, or extension purposes, as well as to create or inform crop growth models.

plant biology↗